Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq16869 118 9e-22 seq540 87.8 1e-12 >seq16869 Length=240509 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| | ||||| || ||||| ||| Sbjct 108067 GTGGTGGAAGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGGATTGTGGCCTTCTTCGAG 108126 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | ||||||| |||| | Sbjct 108127 TTCGGCGGCGTGATGTGTGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 108186 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 108187 ATCGCCGCCTGGATGACCGA 108206 >seq540 Length=81673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 ||||| || | || |||||||||||||| | || |||||||| | ||| ||||| Sbjct 23845 AGCCCCGTGACATGGGCAATCATGTATGTAAGCAGTGAATAGCTGGCAATATTGAAAGGC 23904 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| | || ||||| || | |||||| || | || || ||| | Sbjct 23905 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCACGACAATTCACCATTTAGA 23964 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | || |||||||||| | |||| Sbjct 23965 ACATAGAACTGGCAAAGAGCATGGCATGGAGGCAAAGCCAT 24005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413131279301296