Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 154 3e-32
seq21304 132 1e-25
seq109229 111 4e-19
>seq12144
Length=38566
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| |||||||| || |||| |||||||| | | || | |||||
Sbjct 1123 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 1064
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| ||||| |||||||||||
Sbjct 1063 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 1004
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 1003 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 944
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| ||||| || || | ||| | |||||
Sbjct 943 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911
Score = 150 bits (166), Expect = 4e-31
Identities = 152/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| |||||||| || |||| ||||| |||| || || | |||||
Sbjct 667 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 608
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| ||||| |||||||||||
Sbjct 607 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 548
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 547 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 488
Query 225681 CTTGCCCGTCAAAGTTTT 225698
||| || ||||| || ||
Sbjct 487 CTTACCGGTCAAGGTCTT 470
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| |||||||| || |||| ||||| |||| || || | |||||
Sbjct 439 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 380
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || || ||||| ||||| |||||||||||
Sbjct 379 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 320
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 319 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 260
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||| |||| || |||| || | ||||| ||
Sbjct 259 CTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTT 224
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| |||||||| ||||| || |||| ||||| |||| || || | |||||
Sbjct 1351 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1292
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| || || ||||| || | || || ||||| ||||| |||||||||||
Sbjct 1291 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 1232
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||||||| || |||||||| || || || || | ||||| ||
Sbjct 1231 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 1172
Query 225681 CTTGCCCGTCA 225691
||| || ||||
Sbjct 1171 CTTACCGGTCA 1161
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| ||||| |||||||| || |||| ||||| || | || || | |||||
Sbjct 895 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 836
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||||||||| || | || || ||||| |||||||||||||||||
Sbjct 835 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTC 776
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||||| || |||||||| || || || || | ||||| ||
Sbjct 775 CTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 716
Query 225681 CTTGCCCGTCA 225691
||||| ||||
Sbjct 715 TTTGCCAGTCA 705
>seq21304
Length=31350
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || || |||||||| || || |||| ||||| || | || || | ||||||
Sbjct 370 CAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 429
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || || ||||| |||||||||||
Sbjct 430 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 489
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 490 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 549
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| || || | || | ||||||||
Sbjct 550 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 585
Score = 123 bits (136), Expect = 6e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || || |||||||| || || |||| ||||| |||| | || | ||| ||
Sbjct 142 CAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 201
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| ||||| || | || || || |||||||| || ||||||||
Sbjct 202 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 261
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||||| ||| ||| || |||||||| || || || || | ||||| ||
Sbjct 262 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 321
Query 225681 CTTGCCCGTCA 225691
|||||||||||
Sbjct 322 CTTGCCCGTCA 332
>seq109229
Length=213
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || || | ||||| || ||||| || || ||||| ||
Sbjct 213 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATC 154
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| | || ||||| || || || |||||||||||||||||||| ||| ||| |||
Sbjct 153 AGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCG 94
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|||||||| || || || || | ||||| ||||||||||||| || || | |||
Sbjct 93 ATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 34
Query 225706 ACTTGCATTTT 225716
| ||||| ||
Sbjct 33 ATCTGCATGTT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1188461342936616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |