Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq16573 107 3e-18 seq6632 107 3e-18 seq9972 89.7 7e-13 >seq16573 Length=30794 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 23958 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 24017 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 24018 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 24077 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 24078 ACCACTCTCTCACC 24091 >seq6632 Length=32526 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 9692 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9633 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 9632 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 9573 Query 46774 ACAA 46777 |||| Sbjct 9572 ACAA 9569 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| |||||||| || ||||| || |||||| Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || || |||||||| || ||||| ||||| Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10881 >seq9972 Length=29549 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | ||| Sbjct 16338 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 16279 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 || || || ||||| || |||||||| |||||||| ||||| || Sbjct 16278 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 16235 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||| || ||||| || || || || || |||||||| ||||||| || |||||| Sbjct 8358 GTGCCTGCGTTGAACAAGGTGGGGGAGGCGTGGGTGAACCACCTTTCAGACAGAAGATTG 8299 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || || || || || | || | ||||||| Sbjct 8298 TAAGTTTCAATTGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 8239 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| || || || Sbjct 8238 ATATGCTGTGGACGCTC 8222 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| || | || || || || || || | Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || |||||||||||||| ||||| || || ||||| || | || || | Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710560649268480