Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3306 149 9e-31 seq3404 127 3e-24 >seq3306 Length=279808 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 151288 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 151229 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 151228 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 151169 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 || | ||||| |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 151168 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 151109 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 151108 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 151049 Query 9484 TG 9485 || Sbjct 151048 TG 151047 Score = 132 bits (146), Expect = 7e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| ||||||||||| || ||||||||| | ||||||||||| | || Sbjct 153266 AAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGGAGCAGATAGCATTT 153207 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || ||||| || || || | ||| | || | ||||| |||||| Sbjct 153206 CCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTGTTTCACCAAAGATG 153147 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || || || |||| ||| || | | || | ||||||||||| ||| || | ||| Sbjct 153146 GCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCATAGCATCAATGTCC 153087 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAA 8594 || ||||| | ||||| || || || || ||||||||||| ||||||| Sbjct 153086 CCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTAA 153034 >seq3404 Length=932556 Score = 127 bits (140), Expect = 3e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 15404 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 15345 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 15344 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATA 15285 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | || | ||| Sbjct 15284 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTTCTTGGGG 15225 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTC 9470 || | || || |||| |||||| | ||||| | || |||| | |||||| |||| || Sbjct 15224 ACGGCAGGCGGGTAGACCATGTGGA-CTGGAGCATCAGTGACTGTGGGGGGGTACACCTC 15166 Query 9471 ACCGTCAATCATCT 9484 || || | || || Sbjct 15165 TCCATCCACCACCT 15152 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 17959 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 17900 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | |||||| Sbjct 17899 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGAT 17840 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| ||||| | || || || || | ||||| ||| |||| |||||| || || Sbjct 17839 GGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAG 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714489922850560