Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq3306 149 9e-31
seq3404 127 3e-24
>seq3306
Length=279808
Score = 149 bits (164), Expect = 9e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
|| |||| ||| || |||||||| ||||| ||| ||| || ||||| || ||||||||
Sbjct 151288 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 151229
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || |||| |||||||||||| ||||| || || || |||||||| | || ||
Sbjct 151228 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 151169
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|| | ||||| |||| || ||||||| | ||| || ||| || | | |||||
Sbjct 151168 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 151109
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|||||||| | |||| ||| || || | || ||||||||||| || |||||||||
Sbjct 151108 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 151049
Query 9484 TG 9485
||
Sbjct 151048 TG 151047
Score = 132 bits (146), Expect = 7e-26
Identities = 170/233 (73%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||||| | ||| ||||||||||| || ||||||||| | ||||||||||| | ||
Sbjct 153266 AAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGGAGCAGATAGCATTT 153207
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
|||| || ||||| || ||||| || || || | ||| | || | ||||| ||||||
Sbjct 153206 CCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTGTTTCACCAAAGATG 153147
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
|| || || |||| ||| || | | || | ||||||||||| ||| || | |||
Sbjct 153146 GCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCATAGCATCAATGTCC 153087
Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAA 8594
|| ||||| | ||||| || || || || ||||||||||| |||||||
Sbjct 153086 CCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTAA 153034
>seq3404
Length=932556
Score = 127 bits (140), Expect = 3e-24
Identities = 182/254 (72%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| |||| |||||||| || ||||| || ||||| |||||
Sbjct 15404 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 15345
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||||| | ||||| || | |||||| || | ||||||| |||||||||||
Sbjct 15344 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATA 15285
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||||| || | ||| ||||| |||| || || | ||||| || | || | |||
Sbjct 15284 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTTCTTGGGG 15225
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTC 9470
|| | || || |||| |||||| | ||||| | || |||| | |||||| |||| ||
Sbjct 15224 ACGGCAGGCGGGTAGACCATGTGGA-CTGGAGCATCAGTGACTGTGGGGGGGTACACCTC 15166
Query 9471 ACCGTCAATCATCT 9484
|| || | || ||
Sbjct 15165 TCCATCCACCACCT 15152
Score = 105 bits (116), Expect = 1e-17
Identities = 130/178 (73%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432
|||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || |
Sbjct 17959 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 17900
Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492
| || ||||| |||||||| || | ||| | ||||| || || || || | ||||||
Sbjct 17899 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGAT 17840
Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550
|||| ||||| | || || || || | ||||| ||| |||| |||||| || ||
Sbjct 17839 GGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAG 17782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714489922850560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |