Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12144 145 2e-29 seq109229 120 7e-22 seq16447 84.2 5e-11 >seq12144 Length=38566 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || ||||| |||||||||||||| | ||| || | Sbjct 686 CAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTG--AGCCCAGTG 743 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| ||| ||||| |||||||| ||||| || || || || |||| Sbjct 744 ACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAGC 803 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 804 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 863 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 864 TCCAGAAGGAATCCACCCTCCATCTTGT 891 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 1142 CAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 1199 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||| |||||||| ||||| || || || || |||| Sbjct 1200 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 1259 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 1260 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 1319 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 1320 TCCAGAAGGAATCTACTCTCCATCTTGT 1347 Score = 136 bits (150), Expect = 9e-27 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || || || || || || || |||||||||||||| | ||| || | Sbjct 230 CAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGTG 287 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||| |||||||| ||||| || || || || |||| Sbjct 288 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 347 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 348 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 407 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 408 TCCAGAAGGAATCCACCCTCCATCTTGT 435 >seq109229 Length=213 Score = 120 bits (132), Expect = 7e-22 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 29 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 86 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 87 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 146 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || ||||| || |||||||| || ||||| | || || |||| || ||| Sbjct 147 AGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACA 206 Query 178102 TCCAAAA 178108 |||| || Sbjct 207 TCCAGAA 213 >seq16447 Length=6935 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || ||||| |||||||| ||||||||| | ||| Sbjct 3446 CAGATCTTCGTGAAGACGTTGACGGGTAAAACCATCACCCTTGAGGTGGAACCCAACGAC 3387 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || |||||||||||||| ||||| ||||| |||||||| Sbjct 3386 ACGATCGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGG 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199623119702616