Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2024 120 4e-22 seq2512 114 2e-20 seq1865 96.9 4e-15 >seq2024 Length=1447008 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 565183 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 565124 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 565123 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 565064 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 565063 CTACAACACGTTCTCC 565048 >seq2512 Length=5690391 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 2933998 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2934057 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 2934058 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2934117 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 2934118 CAACCACTCTCTCACC 2934133 >seq1865 Length=263943 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 24819 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 24878 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 24879 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 24938 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 24939 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 24989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 27134 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 27193 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || || ||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 27194 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 27253 Query 53269 ACTATTTCTAAGACCGTAT 53287 || ||||| | ||||||| Sbjct 27254 GCTGTTTCTGACACCGTAT 27272 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| ||||| ||||||| || || || |||||||| || || || || ||||||| Sbjct 28631 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 28690 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||| || || || || | || || | || || || |||| ||||| || | Sbjct 28691 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGGCTTTCAAAGGGGT 28750 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | | || || |||||||| | || || |||||||| || || || | ||| | Sbjct 28751 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 28810 Query 53568 TCTTATTAGAGATTTCAGC 53586 | || ||| |||||| Sbjct 28811 GTCTGTTGGAGCGTTCAGC 28829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||| ||||||||||| || || | || || ||||||| || || Sbjct 32856 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 32915 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 32916 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 32974 Query 54148 TTCCAAGTATATGG 54161 |||| ||| |||| Sbjct 32975 CTCCAGGTAGATGG 32988 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||||| ||| || ||||||||||| | ||| || || || || || || || |||| Sbjct 38770 CACTAAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGAA 38829 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | || || || || |||| || || || || || |||| || | ||| || |||| Sbjct 38830 TAGCGTAGTCGGGGTGTTTGGTGGTCAGGGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 38889 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| ||||| || || ||| | || | || || || || ||||| Sbjct 38890 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 38935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593701925550480