Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2048 150 2e-31 seq2089 105 8e-18 >seq2048 Length=1318502 Score = 150 bits (166), Expect = 2e-31 Identities = 187/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| | |||||||||||| || || |||||| ||| ||| Sbjct 654208 GAACTTCTCAAAGTTCCAGGAGATGTCGTTGCGGCAGACGGGGGACCAGATGATGTACTG 654149 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| ||||| | ||||||| || ||||| |||||| ||||| Sbjct 654148 TGGGTTGGTCATGAGCGAGGAGGGGTCGTCGTGCGGGAAAGGCAGCGCCTCTTTCAGGAA 654089 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || ||| || || || || | ||||| ||||||||||||||||| | || || | Sbjct 654088 GGTGAAAAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAATC 654029 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 |||| | | ||||| |||||||| ||||||| ||| ||| ||| |||||| | || Sbjct 654028 GGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCAGCGAAAGCAGGATCTCCTCGTTTGT 653969 Query 83383 GGCGTTTTCCTGGTGA 83398 ||| ||||||||| || Sbjct 653968 GGCATTTTCCTGGGGA 653953 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| |||||||| || || ||||| ||||| || ||||||||| | || || Sbjct 653822 CCTGGTGCCCGAACTGATTGCAGGGGAAGCCAAGGACCCGCAGCCCCCGGGGGCCGTAGC 653763 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||| | ||| | | || ||| || | |||||||| ||||| | Sbjct 653762 GCCGCTGCAGCTCGTTGAGCTGCTGGAAGTCGCGGGTGGTTGTGCCTCAGAGCGACGCCA 653703 Query 83511 CGTT 83514 |||| Sbjct 653702 CGTT 653699 >seq2089 Length=811410 Score = 105 bits (116), Expect = 8e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 126649 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 126706 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| || || |||| |||||| ||||||||||||||| Sbjct 126707 GCGGGCT-TGCAGCTGGTTGAGCTGGGTATAATCCCTCACCGTGGTACCTCAGAGGGACG 126765 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| ||||| | || |||||||| || Sbjct 126766 CCACGTTCTCAATGAGGACCACGCGGCCCCGGAA 126799 Score = 104 bits (114), Expect = 3e-17 Identities = 218/312 (70%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||| ||||||| || || ||| || |||| ||||||| | Sbjct 126223 GAGGAGGCGCTGGATGTCAGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 126280 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| |||||||||||||||||||| | |||| | Sbjct 126281 CGGAAAGGTTCCCCTTCGGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 126340 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | ||| || ||||| | || |||| ||| || || |||| | ||||| Sbjct 126341 CGCCGCACGGGGCTCCAGGTGAGGAAGCGGGGCTCGGCCATCAGATGTGC-CGCCTCGTC 126399 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 ||| | |||||| |||| || ||| |||| |||| || || || ||| || Sbjct 126400 AGCCGGCTCAGGCAGGTGAGCCT-TC--AGGTAGGCAAAGACGGGGTGGGTGTCCT-GC- 126454 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| ||||| | ||||| ||||||||||| ||| || || Sbjct 126455 CCGTTCACCTGGCACTTCTGAAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGC 126514 Query 83348 ACGTGCTTCAGG 83359 || ||||||||| Sbjct 126515 ACATGCTTCAGG 126526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608776625996040