Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1971 132 4e-26 seq2572 131 1e-25 >seq1971 Length=2580344 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||| || ||||| || ||||| ||||| | |||||| || | || Sbjct 2121077 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121018 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 2121017 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2120958 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2120957 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2120898 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 |||||||| | || || ||||| || ||||| ||||| Sbjct 2120897 TTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTTGAA 2120860 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||| || ||||| || ||||| ||||| | |||||| || | || Sbjct 2121305 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121246 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || |||||||| || ||| | |||||||||||| Sbjct 2121245 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2121186 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2121185 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 2121126 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || || || || || || ||||| Sbjct 2121125 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2121094 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| || | || Sbjct 2121533 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121474 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||||||||||| Sbjct 2121473 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCC 2121414 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2121413 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2121354 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 2121353 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 2121322 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||| || ||||| || ||||| ||||| | |||||| || | || Sbjct 2121989 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121930 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 2121929 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2121870 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2121869 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2121810 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 2121809 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2121778 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||| ||||| || ||||| || || | ||||| | | || Sbjct 2121761 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCT 2121702 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || |||||||| || ||| | |||||||||||| Sbjct 2121701 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2121642 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||||| | | | || |||| |||||| || | ||| |||||| Sbjct 2121641 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2121582 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || || || || || || ||||| Sbjct 2121581 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2121550 >seq2572 Length=11124332 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| |||||||||||| || ||||| ||||| | |||||| | | || Sbjct 4781360 AGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4781419 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | ||| |||||||| Sbjct 4781420 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4781479 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 4781480 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 4781539 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || ||||| || |||||||| Sbjct 4781540 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 4781574 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || | ||| | ||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 4780885 GTTACCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTC 4780944 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | |||| |||||||| ||||| ||| | || | |||||||| || Sbjct 4780945 GGAAAGGGTTCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGG 4781004 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| |||||||| |||||| || || | | | || |||| |||||| Sbjct 4781005 CGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 4781064 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 4781065 AACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781115 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| |||||||||||||| ||||| ||||| | ||||| | |||| Sbjct 4781132 AGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTCT 4781191 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || || | ||| |||||||| Sbjct 4781192 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGGAATGCCCTCCTTGTCC 4781251 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 4781252 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 4781311 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 4781312 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245557201116