Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq1947 158 1e-33 >seq1947 Length=2772361 Score = 158 bits (174), Expect = 1e-33 Identities = 150/191 (79%), Gaps = 17/191 (9%) Strand=Plus/Plus Query 139498 GCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGC--CCCACGGCGCAggggggcgcggggg 139555 ||||||||||| |||||| ||||| |||||||| |||||||| |||| |||||| || Sbjct 1544732 GCCGCGCGTGTCGGAGCGGCGCCGGCCGCGCGCGCCCCACGGCTGAGGGAAGCGCGGCGG 1544791 Query 139556 --ttgccccgggggcgccgctcccgtgttgctctgctgggg----------gcgcggggc 139603 || ||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 1544792 GTTTATCCCGGCGGCGCCGCTCCCGTTTTGCTCTGCTGGGGTCCCCCGCGGGCGCGGGGG 1544851 Query 139604 cgcgcgcCGCATCTCCCGGGCGCC---GCCGAGGCTGACAGAGGCGAACTCTTCGCGGCG 139660 ||| || | |||||| |||| |||||||||||||||| ||| |||||||||||| Sbjct 1544852 CGCCTCCCTCCATTCCCGGCCGCCGCCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCG 1544911 Query 139661 GCAATGGCGGG 139671 ||| ||||||| Sbjct 1544912 GCAGTGGCGGG 1544922 Score = 158 bits (174), Expect = 1e-33 Identities = 150/191 (79%), Gaps = 17/191 (9%) Strand=Plus/Minus Query 1949 CCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTCGGC---GGCGCCCGGGAGA 2005 ||||||| ||||||||||||||| ||| |||||||||||||||| |||| |||||| Sbjct 1544922 CCCGCCACTGCCGCCGCGAAGAGCTCGTCTCTGTCAGCCTCGGCGGCGGCGGCCGGGAAT 1544863 Query 2006 TGCGgcgcgcggccccgcgc----------ccccagcagagcaacacgggagcggcgccc 2055 | || ||| |||||||| |||||||||||||| |||||||||||||| Sbjct 1544862 GGAGGGAGGCGCCCCCGCGCCCGCGGGGGACCCCAGCAGAGCAAAACGGGAGCGGCGCCG 1544803 Query 2056 ccggggcaa--cccccgcgccccccTGCGCCGTGGG--GCGCGCGGACGGCGTCGCTCCC 2111 ||||| || || |||||| |||| |||||||| |||||||| ||||| |||||| Sbjct 1544802 CCGGGATAAACCCGCCGCGCTTCCCTCAGCCGTGGGGCGCGCGCGGCCGGCGCCGCTCCG 1544743 Query 2112 ACACGCGCGGC 2122 ||||||||||| Sbjct 1544742 ACACGCGCGGC 1544732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 284/434 (65%), Gaps = 64/434 (15%) Strand=Plus/Minus Query 1501 TGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCGCACCGGCCCCTCT-C 1559 ||| ||| | ||| || ||||| || | ||||||||||||||| | | | || | Sbjct 1545425 TGGTGCG-GCCGGCGGACGAATGGCCCGAGCGTTCCAAACTCCCGCCACTCTCTCGCTAC 1545367 Query 1560 TGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGC-CCGGCCAATAGG 1618 || | |||||| | |||| ||||| || | | || || | ||| ||||| || Sbjct 1545366 CGCCCCCTCTCCCCGCCGCGACCAATGGCGGAGGAGGAGGGTGCCCATCCGACCAATGGG 1545307 Query 1619 CGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGA-GCCCCACGCGGGGTTCCCCCGGCAC 1677 |||||| |||||| ||| || | ||| |||| | | || |||| ||||| | Sbjct 1545306 GGCGCGGCGGGCGT-GGCCTAG-AGGCTTTAAGAAGGCGGTCG-GGGGCGCCCCCAAGTC 1545250 Query 1678 ACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACTG 1736 |||||||||||| |||| | || || ||||||||||| | ||| Sbjct 1545249 GCGTGGCGGGTGGGGAGGCCCTGCAATGACTAACCCTAATGG---------------CTG 1545205 Query 1737 TCGCCGCGCTCCCTCCGCCCG----CTGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGA 1791 ||| |||||||| |||||| |||||| ||||||||||||||||||| | |||||| Sbjct 1545204 CCGCTGCGCTCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTTCAGCGGACGAGGGGA 1545145 Query 1792 GCCGCCCCAGGGGGCGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGGAGAAAGGACCGA 1851 | |||| ||||| | ||| | ||| ||||| Sbjct 1545144 GTAGCCC--GGGGGTG-----------------------GGA-GTGGGGGAAAG------ 1545117 Query 1852 AAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCT-CTCGCCCCCATCCG 1910 |||||| | | || | |||||||||||||||||||||| || ||| ||| ||| Sbjct 1545116 AAGGGGGT---CTGCCATTAAAAAAAAACGTCAGCGAGGGGGGCTCCTCACCCAGGCCCG 1545060 Query 1911 CCCTGGGGTCCTCG 1924 |||||||||||||| Sbjct 1545059 CCCTGGGGTCCTCG 1545046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 283/434 (65%), Gaps = 64/434 (15%) Strand=Plus/Plus Query 139696 CGAGGACCCCAGGGCGGATGGGGGCGAG-AGGACCCCTCGCTGACGtttttttttGTTTG 139754 ||||||||||||||||| ||| ||| || |||||||||||||||||||||| | | Sbjct 1545046 CGAGGACCCCAGGGCGGGCCTGGGTGAGGAGCCCCCCTCGCTGACGTTTTTTTTTAATGG 1545105 Query 139755 CCGTGGAGCCCCTTTCGGTCCTTTCTCCCGCGTCCGCCCCANNNNNNNNNNNNNNNNNNN 139814 | | | |||||| ||||| ||| | |||| Sbjct 1545106 CAG---ACCCCCTT------CTTTCCCCCACT-----CCCAC------------------ 1545133 Query 139815 NCCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAG----CGGGCGG 139869 |||| |||| ||||||| | ||||||||||||||||||| |||||| |||||| Sbjct 1545134 -CCCC--GGGCTACTCCCCTCGTCCGCTGAAAGTCAGCGAGTAAAACAGCGGACGGGCGC 1545190 Query 139870 AGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT- 139928 |||||||| ||| ||| | ||||||||||| || || | |||| Sbjct 1545191 GGGGAGCGCAGCGGCAG---------------CCATTAGGGTTAGTCATTGCAGGGCCTC 1545235 Query 139929 TCCACCCGCCACGTGTGCCGGGGGAACCCCGCGTGGGGC-TCTTGTAGCTTCCTCCGCCT 139987 |||||||||||| | ||||| |||| || | | |||| ||| | || ||| Sbjct 1545236 CCCACCCGCCACGCGACTTGGGGGCGCCCC-CGACCGCCTTCTTAAAGCCT-CTAGGCC- 1545292 Query 139988 ACGCCCACCGCGCGCCTATTGGCCGG-GCTGTACGCTGCCGCGTAGCTATTGGCGGCGGG 140046 |||||| |||||| || ||||| ||| | || || | | || ||||| |||| Sbjct 1545293 ACGCCCGCCGCGCCCCCATTGGTCGGATGGGCACCCTCCTCCTCCGCCATTGGTCGCGGC 1545352 Query 140047 GAGGAGAGCGAGCAG-AGAGGGGCCGGTGCGGGAGTTTGGAACTCCGCGGTCATTCATCT 140105 | |||||| | || | || | | | ||||||||||||||| | || ||||| || Sbjct 1545353 GGGGAGAGGGGGCGGTAGCGAGAGAGTGGCGGGAGTTTGGAACGCTCGGGCCATTCGTCC 1545412 Query 140106 CCCGCCACGCCCCA 140119 ||| | ||| ||| Sbjct 1545413 GCCGGC-CGCACCA 1545425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569049942482640