Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq1845 253 2e-62 >seq1845 Length=13415888 Score = 253 bits (280), Expect = 2e-62 Identities = 307/421 (73%), Gaps = 1/421 (0%) Strand=Plus/Minus Query 125093 CCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCA 125152 ||||| || ||| ||||||||||||||| || || |||||||||| |||| ||||||| Sbjct 521817 CCCGTCCCC-GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGGCCA 521759 Query 125153 GGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACA 125212 |||| ||||| |||||| || ||| ||||| ||||| || | ||||| ||| || Sbjct 521758 GGTAGGCGGCAAGCGCTTCGACCAGGCGGCGCGGCCCGTCGCCGCAGCCCCGCTCGGCCA 521699 Query 125213 GCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGC 125272 |||| | ||||||| |||| ||| ||| | |||||| || |||||||||| || Sbjct 521698 GCGCGGCGGCCAGCGTGCCGGCGAAGACCACCAGCGCCAGCAGCCGGCCCCAGTTGAGGC 521639 Query 125273 CGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGC 125332 ||| ||| | || || | | |||| | |||| || | ||| || ||| Sbjct 521638 CGCCGTCGGCCTCCAGTTGCGCCGCCACCCGCCCCAGCAGCGCCGCCGCCTCCCGCGGCT 521579 Query 125333 CGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGG 125392 || | | ||| | ||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 521578 CGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGCCGCTCCAGCTCGG 521519 Query 125393 CCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGC 125452 ||||||| ||||| || || || || ||| |||| | ||| | || Sbjct 521518 CCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCCCGGCGCCGCCACCGC 521459 Query 125453 AGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGG 125512 ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | ||||| Sbjct 521458 GATGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGACATGG 521399 Query 125513 C 125513 | Sbjct 521398 C 521398 Score = 244 bits (270), Expect = 1e-59 Identities = 305/421 (72%), Gaps = 1/421 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| ||||||||||| Sbjct 521398 GCCATGTCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAT 521457 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || | ||| | |||| ||| || || || |||||||| | ||||||||| || Sbjct 521458 CGCGGTGGCGGCGCCGGGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 521517 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 |||||||||||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 521518 GCCGAGCTGGAGCGGCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 521577 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || |||| | |||| | | || || | ||| || Sbjct 521578 GAGCCGCGGGAGGCGGCGGCGCTGCTGGGGCGGGTGGCGGCGCAACTGGAGGCCGACGGC 521637 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | ||| ||| |||| ||||||| | ||| Sbjct 521638 GGCCTCAACTGGGGCCGGCTGCTGGCGCTGGTGGTCTTCGCCGGCACGCTGGCCGCCGCG 521697 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| | || ||||| ||||| ||| || |||||| ||||| ||| Sbjct 521698 CTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGCCGCCTGGTCGAAGCGCTTGCCGCCTAC 521757 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| |||||||||| || || ||||||||||||||| ||| || |||| Sbjct 521758 CTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGC-GGGGACGG 521816 Query 157503 G 157503 | Sbjct 521817 G 521817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509167126915200