Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2378 369 3e-97 seq2004 104 2e-17 >seq2378 Length=4917022 Score = 369 bits (408), Expect = 3e-97 Identities = 690/1011 (68%), Gaps = 6/1011 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||||| || | ||||| | ||||||||| || ||||||| ||||| Sbjct 3725352 TACCTGAACATGACGAAGGACTGCAGGAGCTTCAAGGAGACGCGGCAGTTCATCGAGTTC 3725411 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| | || ||| ||| ||||||||||||||||| ||||| |||| | || Sbjct 3725412 CCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAACAAC 3725471 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||| | || | || |||| |||||| | ||||| || Sbjct 3725472 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGCATC 3725531 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || ||||||||| | | ||| | ||||| || |||||| | ||||| Sbjct 3725532 CACGTTGACAGGAAGTCCCCGGCTATCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 3725591 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||||||||| |||| |||| || ||| |||||| ||||||||||||||| | Sbjct 3725592 TTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 3725651 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| || ||||| ||||| ||| | ||| || | |||||| | |||||||| | || Sbjct 3725652 CTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTAT 3725711 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || ||||| || || |||||||| |||||||| || ||||| ||| ||| Sbjct 3725712 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAGTCAGCGCC 3725771 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| | || ||| |||||| |||||||| ||| || || | ||||| Sbjct 3725772 CTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTCCAAGCGG 3725831 Query 108108 aaTCGCTGGAAATACCGC--TATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TG 108164 |||||| | || | | || | | ||| || ||| |||| | | | Sbjct 3725832 GCACGCTGGCAGTATCACCACATAGTGGGGCAGTTCATCT---CCCGGACAGCCACAGAG 3725888 Query 108165 AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || || || || | || | ||||||||||| || ||||| || | | | | | Sbjct 3725889 AAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGTACATCGCAGTCACA 3725948 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 || ||||| || || | |||| || ||||| | | | | | |||| |||| | Sbjct 3725949 CGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACAACACTGCAGTTCTTTGAGTGGGCC 3726008 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 || |||||||| ||||| ||||| ||| ||||||||||||| | || || | || Sbjct 3726009 AAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCAACCGCATGCCTGGCGTG 3726068 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || ||||| | || | ||||| || |||| || |||| ||| | || | Sbjct 3726069 CCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGATATGAACGCCCTACCCCGC 3726128 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || |||||||||||||||| ||||| || ||||| ||| ||||| || | |||||| Sbjct 3726129 CTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCCTACCCGCCCTGC 3726188 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 | || || | | | || ||||||| ||||||| || ||| || |||||| ||| Sbjct 3726189 ACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTC 3726248 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584 ||| | || ||||||||||| |||||||| ||||| |||||| | || | | | | Sbjct 3726249 CAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCGTGGTGGACGCCGCCGCCATCCTG 3726308 Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGA 108635 ||| | || |||||||| || || | |||| |||| || | | ||| ||| Sbjct 3726309 TGCCTGGAGGAGTACCTGCGCCACAGGGCCCTCTACGGCAAGGGACTCTGA 3726359 >seq2004 Length=1623906 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || ||| || | ||||| || ||||| | Sbjct 1607249 TTGAGTGGGCAAAAGATACTTACAGCCCAGATGAATACTTATGGGCAACAATTCAGAGAA 1607308 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | || | |||| || |||||| | | || |||||| Sbjct 1607309 -TCCCTGAAGTCCCAGGTGCAGTGTCTTCTAGTGAC---AAGTATGATGTTTCTGACATG 1607364 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || ||| || Sbjct 1607365 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAGGGTGCA 1607424 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| |||| | || | | |||| ||| |||| || ||| Sbjct 1607425 CCTTACCCACCATGCGGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 1607484 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 1607485 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 1607532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348257547761574