Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2024 123 2e-23 seq2512 111 2e-19 >seq2024 Length=1447008 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| |||||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 565183 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 565124 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| |||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 565123 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 565064 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 565063 CTACAACACGTTCTCC 565048 >seq2512 Length=5690391 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 2933998 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2934057 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || |||||||| || || |||||||||||||| | Sbjct 2934058 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2934117 Query 14014 C 14014 | Sbjct 2934118 C 2934118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479712103013400