Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2512 107 2e-18 seq2024 98.7 9e-16 >seq2512 Length=5690391 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 2934000 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2934059 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 2934060 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 2934119 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 2934120 ACCACTCTCTCACC 2934133 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861 ||||||| ||| |||| || |||| || | || ||| | |||||||| | Sbjct 2927744 AAAAATCTGCATCCAGAGTGAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAACG 2927801 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | || ||||| || |||||||||||||| || |||||||| || Sbjct 2927802 TTGATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAAAGAAATATTCTC 2927861 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 2927862 CATGAAATCAAAAGGATTTT 2927881 >seq2024 Length=1447008 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| ||| || Sbjct 565181 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 565122 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 565121 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 565062 Query 13295 ATCAAC 13300 | |||| Sbjct 565061 A-CAAC 565057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430968475362702