Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2572 86.0 5e-12 >seq2572 Length=11124332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||||||||| |||||||| || | | |||| |||| || Sbjct 4780906 CACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGCCCGTCTTC 4780965 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || | | || || | ||||||||| ||| | | ||||||||| Sbjct 4780966 CAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTG 4781025 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | | ||||| || | | ||| ||| | || ||||| || Sbjct 4781026 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTT 4781085 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 4781086 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421237589768651