Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2092 87.8 9e-13 seq2230 82.4 4e-11 seq2020 82.4 4e-11 >seq2092 Length=1809160 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| || ||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 1021947 TAAAAACTCAGAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 1022005 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 1022006 CGCTCTAACCAACTGAGCTAACCGGCC 1022032 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 1015840 AAAAACCGGAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 1015899 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| |||||||||||||| ||||| Sbjct 1015900 CTCTAACCAACTGAGCTAACCGGCCG 1015925 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1023199 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1023258 Query 11528 CCG 11530 ||| Sbjct 1023259 CCG 1023261 >seq2230 Length=2534844 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 803975 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 803916 Query 11528 CC 11529 || Sbjct 803915 CC 803914 >seq2020 Length=4879042 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1520479 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1520538 Query 11528 CC 11529 || Sbjct 1520539 CC 1520540 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261482751464476