Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1971 129 5e-25 seq2572 114 1e-20 >seq1971 Length=2580344 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | |||||||||||| || | ||| || ||| | Sbjct 2122004 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2121945 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || |||||||| || ||| Sbjct 2121944 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 2121885 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || |||||||| || | | |||||| | | ||||| Sbjct 2121884 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 2121825 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||| ||||||||||||| Sbjct 2121824 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGC 2121776 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | |||||||||||| || | ||| || ||| | Sbjct 2121092 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2121033 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || |||||||| || ||| Sbjct 2121032 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 2120973 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || |||||||| || | | |||||| | | ||||| Sbjct 2120972 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 2120913 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || || |||||||||||||| Sbjct 2120912 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 2120866 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | |||||||||||| || | ||| || ||| | Sbjct 2121320 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2121261 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || | ||||| | || |||||||| || ||| Sbjct 2121260 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 2121201 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || |||||||| || | | |||||| | | ||||| Sbjct 2121200 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 2121141 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| |||||||| || || || | || ||||| ||||||||||||| Sbjct 2121140 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 2121092 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | || |||||||| || | ||| || ||| | Sbjct 2121548 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 2121489 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || ||||||| | || |||||||| || ||| Sbjct 2121488 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 2121429 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || || || ||| | | |||||| | | ||||| Sbjct 2121428 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACC 2121369 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 2121368 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGC 2121320 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | || |||||||| || | ||| ||||| | Sbjct 2121776 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC--TG 2121719 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| |||||||| || || | ||||| | || |||||||| || | Sbjct 2121718 AGAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGG 2121659 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || |||||||| || | | |||||| | | |||| Sbjct 2121658 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGA 2121599 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 2121598 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 2121548 >seq2572 Length=11124332 Score = 114 bits (126), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||||| |||| || || |||||||| | ||| || ||| Sbjct 4780889 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGG-- 4780946 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | || |||||||| || || ||||||| || || |||||||| || | Sbjct 4780947 AAAGGGTTCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCG 4781006 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | || || |||||||| | | |||||| | | || | Sbjct 4781007 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 4781066 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || || || || || ||||||||||||||||||| Sbjct 4781067 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 4781117 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||||| |||| || || |||||||| | ||| || ||| Sbjct 4781117 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 4781176 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| | || |||||||| || ||| Sbjct 4781177 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGGA 4781236 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| | | |||||| | | || || Sbjct 4781237 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 4781296 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 4781297 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 4781345 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||||| |||| ||| || ||||| || | ||| || || | Sbjct 4781345 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4781404 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| | || |||||||| || ||| Sbjct 4781405 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 4781464 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| | | |||||| | | || || Sbjct 4781465 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 4781524 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 4781525 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276344750360