Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1865 102 2e-16 seq2512 93.3 8e-14 >seq1865 Length=263943 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||||||||| || ||||||||||| ||||||||| |||| | |||||| || Sbjct 32861 CTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCTTC 32920 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| Sbjct 32921 TTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAG 32980 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||||| || | || ||||| Sbjct 32981 GTAGATGGCAAAAGCCCCGGG 33001 >seq2512 Length=5690391 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 2934133 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 2934074 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 2934073 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 2934014 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 2934013 ATTAGCAGAGATGAGG 2933998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944307906959760