Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1971 140 3e-28 seq2572 122 9e-23 >seq1971 Length=2580344 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 2121077 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121018 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 2121017 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2120958 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 2120957 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2120898 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || ||||| || || ||||| || Sbjct 2120897 TTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTT 2120863 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || ||||||||||||| || ||| || | ||| Sbjct 2121761 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCT 2121702 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| || || ||||| ||||| || || Sbjct 2121701 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2121642 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 2121641 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2121582 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 2121581 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2121550 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 2121989 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121930 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 2121929 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2121870 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 2121869 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 2121810 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 2121809 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2121778 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 2121305 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121246 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| ||||| ||||| ||||| || || Sbjct 2121245 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 2121186 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 2121185 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 2121126 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 2121125 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2121094 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 2121533 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 2121474 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 2121473 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCC 2121414 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || ||| | || |||| || || || || | || | ||| Sbjct 2121413 TGGATCTTG-GCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2121355 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || || || || ||||| Sbjct 2121354 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 2121322 >seq2572 Length=11124332 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || ||||| |||||||| || | | ||||||| ||||| Sbjct 4781132 AGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTCT 4781191 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| || || || || Sbjct 4781192 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGGAATGCCCTCCTTGTCC 4781251 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4781252 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 4781311 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 4781312 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781343 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | ||||||| | ||| Sbjct 4781360 AGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4781419 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || || ||||| || || || || Sbjct 4781420 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4781479 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4781480 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 4781539 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || |||||||| Sbjct 4781540 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 4781574 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || ||||| |||||||| || | | ||| ||| ||||| Sbjct 4780904 AGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGCCCGTCT 4780963 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || | || |||||| || || ||||| || || || || Sbjct 4780964 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCC 4781023 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4781024 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 4781083 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 4781084 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628243020440