Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1971 122 8e-23 seq2572 114 1e-20 >seq1971 Length=2580344 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | ||||| || || || || ||||| ||| || ||||| | Sbjct 2121080 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 2121021 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||||||||| || ||||| |||||| Sbjct 2121020 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 2120961 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| |||| ||| | Sbjct 2120960 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 2120901 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || |||||||| |||||||| Sbjct 2120900 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 2120866 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | ||||| || || || || ||||| ||| || ||||| | Sbjct 2121308 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 2121249 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 2121248 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 2121189 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| || | ||| | Sbjct 2121188 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 2121129 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||||||||| || || || || ||||||||| Sbjct 2121128 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 2121093 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | ||||| || || || || ||||| ||| || ||||| | Sbjct 2121992 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 2121933 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||||||||| || ||||| |||||| Sbjct 2121932 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 2121873 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| |||| ||| | Sbjct 2121872 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 2121813 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 2121812 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2121777 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| ||| || ||||| | Sbjct 2121536 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 2121477 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || || || |||||| Sbjct 2121476 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 2121417 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || || | | || | |||||| | |||||| |||| ||| | Sbjct 2121416 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 2121357 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || ||||| ||||||||| Sbjct 2121356 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 2121321 >seq2572 Length=11124332 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| ||||| || ||||| ||| | || || Sbjct 4780901 CGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGCCCG 4780960 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | ||||||||| || || |||||||||||| Sbjct 4780961 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTG 4781020 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 4781021 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 4781080 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4781081 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4781116 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| ||||| || ||||| ||| | ||||| Sbjct 4781129 CGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCG 4781188 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 4781189 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGGAATGCCCTCCTTG 4781248 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 4781249 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 4781308 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 4781309 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4781344 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| || || || ||||| || || ||||| | Sbjct 4781357 CGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4781416 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||| || || |||||||||||| Sbjct 4781417 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 4781476 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 4781477 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 4781536 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 4781537 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4781571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485043092240