Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1865 93.3 4e-14 seq1971 84.2 2e-11 >seq1865 Length=263943 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| |||||||||||||| ||||||||| | |||||| |||| | ||||||| Sbjct 31634 GAGACCGGCACGCCGTACATGCTGTACAAAGACTCTTGCAACCGGAAGAGCAATCAGCAG 31575 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 |||||||| || || ||||| || ||||| || | ||||| Sbjct 31574 AACTTGGGGACCATCAAATGCAGCAATCTGTGTACAGAAAT 31534 >seq1971 Length=2580344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| ||||| || || |||||||| ||||| || || ||| | ||| ||| Sbjct 2121078 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 2121019 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || || | |||| | ||||| || || ||||||||||| || || Sbjct 2121018 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 2120959 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || ||| || | || | |||||| | |||||| ||||| || | || Sbjct 2120958 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2120899 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || || |||||||| || |||||| Sbjct 2120898 CTTGCCGGTCAGGGTCTTTACAAAGATCTGCATC 2120865 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| ||||| || || |||||||| ||||| || ||||| || ||| | ||| Sbjct 2121762 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 2121703 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || ||| | |||| | ||||| || || ||||||||||| || || Sbjct 2121702 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 2121643 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || ||| || | || | |||||| | |||||| ||||| || | || Sbjct 2121642 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2121583 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || || || ||||| Sbjct 2121582 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2121550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988221743960