Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1850 152 7e-32 seq1911 123 4e-23 >seq1850 Length=1560141 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || Sbjct 758079 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 758020 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || || || Sbjct 758019 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 757960 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 |||||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 757959 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 757900 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 757899 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 757840 Query 9967 TG 9968 || Sbjct 757839 TG 757838 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||||||| || ||||| ||| | || |||| Sbjct 760131 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 760072 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| |||||||||||| | |||| Sbjct 760071 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 760012 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||| | || || || || || | ||| | || Sbjct 760011 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 759952 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || | ||| |||| | ||| | ||| || || | Sbjct 759951 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 759892 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 759891 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 759836 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || ||||| | ||| ||| | ||| Sbjct 759322 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTATACTCCCGGTCATGTATCTGGAAAGTG 759263 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 759262 TCGGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 759203 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 759202 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAAC 759145 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || || || || ||||| Sbjct 759144 CACTCAGGTGTTGCACATA 759126 >seq1911 Length=9989472 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 2219099 CCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 2219158 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || || || || |||| | Sbjct 2219159 TTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGATGG 2219218 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 |||||||| | | ||||| |||| || | ||| |||| ||| ||||| || || Sbjct 2219219 GGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAGCTCT 2219278 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 2219279 TCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 2219311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723704017463400