Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1971 127 5e-24 seq2572 123 6e-23 >seq1971 Length=2580344 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| |||||||| || ||||| |||| ||||||||| | || || | ||||| Sbjct 2121078 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 2121019 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || ||| ||||| || Sbjct 2121018 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 2120959 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 2120958 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2120899 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 2120898 CTTGCCGGTCAGGGTCTTTACAAAGATCTG 2120869 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| |||||||| || ||||| |||| ||||||||| | || || | ||||| Sbjct 2121990 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 2121931 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || ||| ||||| || Sbjct 2121930 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 2121871 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 2121870 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2121811 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 2121810 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 2121781 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| |||||||| || ||||| |||| ||||||||| | || || | ||||| Sbjct 2121306 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 2121247 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| || || ||| ||||| || Sbjct 2121246 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 2121187 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 2121186 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 2121127 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || ||||| || || || Sbjct 2121126 CTTGCCGGTCAAGGTCTTCACGAAGATCTG 2121097 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | || || | ||||| Sbjct 2121534 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 2121475 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 2121474 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTC 2121415 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 2121414 CTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2121355 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 2121354 CTTGCCGGTCAGGGTCTTCACAAAGATCTG 2121325 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| |||||| || | | || | ||||| Sbjct 2121762 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 2121703 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| || || ||| ||||| || Sbjct 2121702 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 2121643 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 2121642 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 2121583 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || ||||| || || || Sbjct 2121582 CTTGCCGGTCAAGGTCTTCACGAAGATCTG 2121553 >seq2572 Length=11124332 Score = 123 bits (136), Expect = 6e-23 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || ||||| |||||||| |||| ||||||||||| || || | ||||| Sbjct 4781359 CAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 4781418 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| || || || Sbjct 4781419 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 4781478 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 4781479 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 4781538 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| || || |||||||| || || |||||| Sbjct 4781539 CTTGCCCGTCAGGGTCTTCACAAAGATCTG---CATTTT 4781574 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || ||||||||||||| ||||||||| | | || | || || Sbjct 4781131 CAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 4781190 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| || || || Sbjct 4781191 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGGAATGCCCTCCTTGTC 4781250 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 4781251 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 4781310 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||| || || Sbjct 4781311 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 4781340 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || ||||||||||||| ||||||||| | | || | || || Sbjct 4780903 CAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGCCCGTC 4780962 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| | | |||||| || || ||| || || || Sbjct 4780963 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 4781022 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 4781023 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 4781082 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||| || || Sbjct 4781083 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 4781112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178881556822617