Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2252 95.1 5e-14 seq2203 91.5 6e-13 seq1911 86.0 2e-11 >seq2252 Length=2960275 Score = 95.1 bits (104), Expect = 5e-14 Identities = 236/353 (67%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| || || || ||||| || | || || ||| | || | | || ||| Sbjct 2420602 TCCATGGTCCTCACCAAGATGAAGGAGATTGCTGAGGCGTATCTGGGG-CGCAAGGTACA 2420660 Query 451319 GA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 || ||| || || || || || ||||| |||||||| | || || || || || ||||| Sbjct 2420661 GAATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGA 2420720 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| || || |||| | ||||| | || ||||| ||||| || ||||||||||| Sbjct 2420721 TGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGC 2420780 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTA 451492 |||| ||||| || ||| || ||| | | | | ||| || || | | | Sbjct 2420781 GATAGCCTATGGCCT-GGACAA-GAAAGGTACTCGGGCCGGAGAGAAGAACGTGCTCATC 2420838 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| || || || || ||| |||| || | ||| | ||||| ||||| | ||| Sbjct 2420839 TTTGACTTAGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTT 2420898 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||| | || |||||| || ||||| || || || || |||| || Sbjct 2420899 GAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 2420951 >seq2203 Length=1756170 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || || ||||||||||| | || || || || || Sbjct 885610 GTTACTAATGCTGTCGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 885669 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| || || || ||||| Sbjct 885670 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAACGAGCCGACAGCT 885729 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 885730 GCTGCCATAGCCTATGGTCT 885749 >seq1911 Length=9989472 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 ||||||| | | || | ||||| | | || || | | |||| |||||| |||||| Sbjct 1141688 AAAAAGACAGTATATGTTGTTCTTCTCAGGTCGTTGAAAAGAAAGCCAAGCCCCATATTC 1141747 Query 451209 AAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||| || | ||||| | || ||||| |||||||||||||||||||| |||||| Sbjct 1141748 AAGTCGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCTGAAGAAATTTCTGCTATGG 1141807 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGA 451293 | || || || ||||| || || ||||| Sbjct 1141808 TCCTGACAAAGATGAAGGAGACGGCAGA 1141835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975651292872308