Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2252 111 1e-18 seq2634 89.7 4e-12 seq1911 87.8 1e-11 seq2203 86.0 5e-11 >seq2252 Length=2960275 Score = 111 bits (122), Expect = 1e-18 Identities = 278/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | || ||||| |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 2421716 GCACTGACGTTAAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACT 2421657 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| ||| | | |||| | ||||| || || || || Sbjct 2421656 CCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCTTC 2421597 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAAT 517436 || | | ||||||||| | | |||| || | || | | || || ||||| | Sbjct 2421596 GTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGT 2421539 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| |||||| || ||||| | | || | | | Sbjct 2421538 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTACGCTTGATGAGAGCG 2421480 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 2421479 GTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 2421420 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | |||||| || Sbjct 2421419 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCG 2421360 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 || |||||||| ||||||||||| | | | || || | ||| |||||||| || Sbjct 2421359 TAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 2421304 >seq2634 Length=244221 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 || || ||| | ||||| || ||||| || || ||| | ||| | | | ||||||||| Sbjct 164221 GTGGCTACAGTGGCATTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 164280 Query 367057 TATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 || || || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 164281 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 164340 Query 367117 GG 367118 || Sbjct 164341 GG 164342 >seq1911 Length=9989472 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 1142240 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 1142181 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 1142180 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 1142135 >seq2203 Length=1756170 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| ||||| |||| | || || ||||| || ||||| Sbjct 884779 CAAAAACCGTATTGGTTGGATTCATTGCGACTTGGTTCTTTGCAGCATCGCCGATCAGCC 884720 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || || | || || || || || || ||||| |||||||| |||| Sbjct 884719 TCTCTGTATCCGTGAAGGCGACGTAGCTCGGCGTGGTCCGGTTACCCTGATCATTGGCAA 884660 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 884659 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 884600 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 884599 TTCCGACAGC 884590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780690848647606