Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2203 183 4e-41 >seq2203 Length=1756170 Score = 183 bits (202), Expect = 4e-41 Identities = 368/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || ||||| ||||| ||||| || Sbjct 886415 GCACCATAAGCCACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 886356 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | ||||| || ||||| || ||||| ||||| |||| || || Sbjct 886355 AAGTCCTGCAGCAGCTTCTGAATCTTTGGGATACGAGTCGACCCACCAACCAGCACAATG 886296 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| || | || | || || || | ||||| ||||| |||| Sbjct 886295 TCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 886236 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| ||| || ||||| || || | ||||||||| || ||| Sbjct 886235 GTGCCGCGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 886176 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | || ||||||||||| | | || | | || || | Sbjct 886175 AAGTCAATACCCTCATAGAGAGAGTCAATTTCAATACTGGCCTGCGTGCTAGATGACAGA 886116 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||| | || | | ||| | | Sbjct 886115 GTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGGACTGCTCTCTTGTTCTCAGTG 886056 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | |||||| | || | | | | Sbjct 886055 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 885999 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 885998 TCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 885939 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || ||| Sbjct 885938 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 885879 Query 7577 TTC 7579 ||| Sbjct 885878 TTC 885876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635111753286840