Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2024 123 3e-23 seq2512 105 8e-18 >seq2024 Length=1447008 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 565183 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 565124 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 565123 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 565064 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 565063 CTACAACACGTTCTCC 565048 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| |||||||| || || Sbjct 563077 ATCTTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 563018 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | || ||||| || |||||||| Sbjct 563017 AATCTGGAAGCCATAGAAACACCGAGCCTCTGTGATTTGTACTTC 562973 >seq2512 Length=5690391 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 2933998 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2934057 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 2934058 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2934117 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 2934118 CAACCACTCTCTCACC 2934133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090173119640