Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2203 116 3e-20 seq2252 107 2e-17 >seq2203 Length=1756170 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 885610 GTTACTAATGCTGTCGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 885669 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || |||||||| || || || ||| Sbjct 885670 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAACGAGCCGACAGCT 885729 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 885730 GCTGCCATAGCCTATGGTCTGGACAAA 885756 >seq2252 Length=2960275 Score = 107 bits (118), Expect = 2e-17 Identities = 357/551 (65%), Gaps = 12/551 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | || |||| ||| Sbjct 2420257 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 2420316 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || || || | ||||| Sbjct 2420317 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 2420376 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || |||||||| Sbjct 2420377 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2420436 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | | | |||| | || || ||||| Sbjct 2420437 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 2420496 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || || | ||| ||||| | | ||| Sbjct 2420497 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAACCCAAGGTGCAAGTG 2420556 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 2420557 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 2420611 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTA 550405 | | || ||||| | | || || | | | || | ||| ||| || ||| || Sbjct 2420612 TCACCAAGATGAAGGAGATTGCTGAGGCGTATCTGGGGCGC-AAGGTACAGAATGCTGTC 2420670 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || || |||||||| || || || || || ||||||||||| Sbjct 2420671 ATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACC 2420730 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || |||| |||||||| | |||||||||||||| || || || ||||| | || ||| Sbjct 2420731 ATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCGATAGCCTAT 2420790 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 2420791 GGCCTGGACAA 2420801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029155803163990