Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1971 116 3e-21 seq2572 100 2e-16 >seq1971 Length=2580344 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || |||||||| || || || ||||| |||| | || | | |||| |||| || Sbjct 2121069 ATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 2121010 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | ||| |||||||| ||||||||||| || || || || || Sbjct 2121009 CTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 2120950 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||| | || || || || |||| || |||||||| Sbjct 2120949 TGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 2120890 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| |||||||| Sbjct 2120889 CAGGGTCTTTACAAAGATCTGCAT 2120866 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || |||||||| || || || ||||| |||| | || | | |||| |||| || Sbjct 2121297 ATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 2121238 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| | ||| |||||||| ||||||||||| || || || || || Sbjct 2121237 CTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 2121178 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||| | || || ||||| |||| || |||||||| Sbjct 2121177 TGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGT 2121118 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 2121117 CAAGGTCTTCACGAAGATCTGCATG 2121093 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || |||||||| || || || ||||| |||| | || | | |||| |||| || Sbjct 2121981 ATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 2121922 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | ||| |||||||| ||||||||||| || || || || || Sbjct 2121921 CTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 2121862 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||| | || || || || |||| || |||||||| Sbjct 2121861 TGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 2121802 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 2121801 CAGGGTCTTCACGAAGATCTGCATG 2121777 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| || || || |||||||| | || || | |||| |||| || Sbjct 2121753 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCTTCCAGCTG 2121694 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| | ||| ||||| || ||||||||||| || || || || || Sbjct 2121693 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 2121634 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||| | || || || || |||| || |||||||| Sbjct 2121633 TGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGT 2121574 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 2121573 CAAGGTCTTCACGAAGATCTGCATG 2121549 >seq2572 Length=11124332 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || ||||| || ||||| |||| | |||| | || |||| || Sbjct 4780912 ATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGCCCGTCTTCCAGCTG 4780971 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| ||||| | ||| ||||| ||||||||||| || || || || || || Sbjct 4780972 CTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTT 4781031 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| | || || || || |||| || ||||| || Sbjct 4781032 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGT 4781091 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 4781092 CAGGGTCTTCACAAAGATCTGCATG 4781116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265596616407