Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2004 250 3e-61 seq2378 152 6e-32 >seq2004 Length=1623906 Score = 250 bits (276), Expect = 3e-61 Identities = 653/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||||||||| || |||| ||||| || || || |||||| || ||| || | Sbjct 1607584 TGTGTCGCAGATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 1607525 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 1607524 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 1607468 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || ||| || ||||| | || || || | ||| | Sbjct 1607467 CACAGACAGAGCGAACGTGAACTCCACCGCATGGTGGGTAAGGTGCACCCTTGGACACAT 1607408 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 1607407 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 1607348 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || || || ||||| || || | || || | ||| | || ||||| Sbjct 1607347 ACTTGT-CACTAGAAGACACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAT 1607289 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || |||||||| || || || | ||| || || |||| | ||| ||| Sbjct 1607288 AAGTATTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATTAACTTAACTATTTTGCTG 1607229 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || ||||| || || || || || || Sbjct 1607228 CTTTGTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 1607169 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 1607168 ATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTATGCCTGTGTTTTTTATTTTACCATCA 1607109 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| |||||| || Sbjct 1607108 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCCGTTTCC 1607049 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 1607048 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 1606989 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||||| ||| ||||| || | || ||| || Sbjct 1606988 GGAAAGTCCATGCCACAGAGGTTTATCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 1606929 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| |||||||||||||| || || || ||||| Sbjct 1606928 TCTTTCATGCAGTTAATGTCTGCCTGCACCCGGCTCCAGGAAGCATATACAACACTCTCT 1606869 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 1606868 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 1606810 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 1606809 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 1606750 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || || || || || Sbjct 1606749 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGAATAAGCAAT 1606690 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | | ||| |||| |||||| | || Sbjct 1606689 TGGAAATTCTGCTTCTTCATTGCTGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAA 1606630 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 1606629 GGAGGCACAGTCTGCTGTCATGTTAATATA 1606600 >seq2378 Length=4917022 Score = 152 bits (168), Expect = 6e-32 Identities = 610/946 (64%), Gaps = 46/946 (5%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| | || ||||| || ||| |||| |||| || | |||||| Sbjct 3726334 CTGTGGCGCAGGTACTCCTCCAGGCACAGGATGGCGGCGGCGTCCACCACGGGGTCGAAC 3726275 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||||||| || |||| | Sbjct 3726274 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCACCCCGTAG 3726218 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | ||||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 3726217 ATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGGG 3726158 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || || || | ||| || ||| | | Sbjct 3726157 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGTAGGGCGTTCATATCCGAGAGCTGG 3726098 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | || || || ||||| ||||| || | ||||||||||| Sbjct 3726097 AACTTGTCATTCTGGGGCAGGGAGCCTGGCACGCCAGGCATGCGGTTGAGGGTGGCCCAG 3726038 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | ||| ||||| |||||||| |||||||| | ||| || | ||||| || | Sbjct 3726037 ATGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCAAAGAACTGCAGTGTTGTGGGG 3725978 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | || ||| ||| | || || | | |||||| |||| | ||| Sbjct 3725977 TTCTCAAAGATGTACTGCACGAAGGCCCGTGTGACTGCGATGTACGCATTGCCCGTGAAC 3725918 Query 160464 ATCGG-----TATGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGACACCAC 160516 || || | |||| |||||| || ||| ||| ||| |||| || | | Sbjct 3725917 ATGGGGGAGTTGTGGG--GTGGCGGCAGTTTCTCTGTGGCTGTCCGG-----GAGATGA- 3725866 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-T 160575 | | ||| ||| | | || ||| | || |||| | || | || | | Sbjct 3725865 --ACTGCCCCACTATGTGGTGATACTGCCAGCGTGCCCGCTTG-GAGGCCGAGGGCTTCT 3725809 Query 160576 CCGTCTCTAGACTGTT--GGCACCGTCGAGCGATTTCA-GCTGCTTGACGATCTCTAGGT 160632 | | ||| | ||||| ||| ||| |||| |||| | ||| ||| ||||| || Sbjct 3725808 CTGACTCCATGCTGTTCCGGCCCCG--CAGCGCCTTCAGGGCGCT-GACTATCTCAGCGT 3725752 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT---TTCGCGC 160689 | ||||||| || || ||||| ||||| ||| | | || | |||| | | || Sbjct 3725751 TGGTCTTGATGGGGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC 3725692 Query 160690 TCAGGTCGTGCA---GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAG 160746 || |||| ||||| |||||| || | |||||||||| ||| |||||| | Sbjct 3725691 TC------TGCAACAGGTCCTGCATGCAGTTGAGGTCTGCCTGCAGCCGGGACCAGGAGG 3725638 Query 160747 CGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTC 160806 | || || || || || || || |||||||||| || ||| || | ||||| Sbjct 3725637 CATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGG 3725578 Query 160807 CCACCACCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACA 160863 || ||| ||| ||| | || || | ||| | ||| ||||| | ||| || | Sbjct 3725577 CCCGCACGGCCTCCTGGAAGA---TAGCCGGGGACTTCCTGTCAACGTGGATGCAGTAGA 3725521 Query 160864 GGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGA 160923 |||||| || | ||||| || ||| || | || |||||||||||| || || | |||| Sbjct 3725520 CGTTCTGGGGGGTGTAGAGGGACCTCAGGAGCCGCTCGAACATCTCGATGTTGTTGTGGA 3725461 Query 160924 TCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || || |||||||| || || ||||| | |||||| | ||||| Sbjct 3725460 TGACCATGGAGTAGGCAATGGGGAACTCTGCCTCCTCCTGGCTCAG 3725415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577200072398760