Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1941 170 2e-36 seq1758 170 2e-36 seq2215 143 3e-28 seq1641 134 2e-25 seq2024 111 2e-18 seq2184 96.9 4e-14 seq1968 91.5 2e-12 >seq1941 Length=3969164 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 1616 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1675 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1676 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1735 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1736 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1795 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1796 GCACCTGCTTCAGCACCTTGTA 1817 >seq1758 Length=6076596 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 4181 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 4240 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 4241 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 4300 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 4301 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 4360 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4361 GCACCTGCTTCAGCACCTTGTA 4382 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 21429 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 21370 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 21369 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 21310 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 21309 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 21250 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 21249 GCACCTGCTTCAGCACCTTGTA 21228 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 22538 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 22597 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 22598 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 22657 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 22658 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 22717 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 22718 GCACCTGCTTCAGCACCTTGTA 22739 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 32515 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 32574 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 32575 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 32634 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 32635 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 32694 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 32695 GCACCTGCTTCAGCACCTTGTA 32716 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 97399 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 97458 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 97459 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 97518 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 97519 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 97578 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 97579 GCACCTGCTTCAGCACCTTGTA 97600 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 104581 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 104522 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 104521 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 104462 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 104461 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 104402 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 104401 GCACCTGCTTCAGCACCTTGTA 104380 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 122604 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 122663 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 122664 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 122723 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 122724 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 122783 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 122784 GCACCTGCTTCAGCACCTTGTA 122805 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 144361 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 144302 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 144301 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 144242 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 144241 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 144182 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 144181 GCACCTGCTTCAGCACCTTGTA 144160 >seq2215 Length=69687 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || | |||||| ||||||||||| |||| | || Sbjct 15738 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCTCACGGCCGTCTGGATCTCCCGCGAGGTGA 15679 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || ||||| ||||||| |||| | Sbjct 15678 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGCGAAGCCTCCCCCGCGATGCGCTCGAAGA 15619 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 15618 TGTCGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 15559 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 15558 GCACTTGCTTCAGCACCTTGTA 15537 >seq1641 Length=8005783 Score = 134 bits (148), Expect = 2e-25 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 2286493 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 2286434 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 2286433 TGGTGGATCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 2286374 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2286373 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 2286314 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 2286313 GGACCTGCTTTAGCACCTTGTAGA 2286290 >seq2024 Length=1447008 Score = 111 bits (122), Expect = 2e-18 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 562238 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 562179 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| ||||||||| |||||||| || || Sbjct 562178 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTGTCCCGCAACAGCGGCTC 562125 >seq2184 Length=451678 Score = 96.9 bits (106), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || | |||||| ||||| | |||||| || || Sbjct 305409 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCTCACGGCCGTCTGCACCTCGCGGCTGGTGA 305468 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| | ||| | || ||||| || |||||| | | | | || |||| | Sbjct 305469 TGGTGGAGCGGTGGTTGTACTGGGCCAGGCGCGAGGCCTCCGAGGCCAGCCGCTCGAAGA 305528 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 305529 TGTCATTGACGAAGGAGTTCATGATGCTCATGGCCTTAGAGGAGATGCCAGTGTCTGGGT 305588 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 305589 GCACCTGC 305596 >seq1968 Length=216358 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||| || || ||| ||||| ||| | |||||||| | | |||| | Sbjct 185820 CCCGAGAGCCGGGGGTTCGTGGAGAACTCCTACCTGGCCGGCCTCACCCCCACCGAGTTC 185879 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || ||||| |||||||| ||| ||||||| |||||||||||||||||| Sbjct 185880 TTCTTCCACGCCATGGGCGGCCGCGAGGGGCTCATCGACACCGCCGTCAAGACGGCCGAG 185939 Query 509156 ACGGG 509160 || || Sbjct 185940 ACCGG 185944 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||| ||| | |||||| ||||| Sbjct 200916 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGTCACCTGGCGCTGCTGTGTGACAC 200975 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || |||||| || ||||| |||| ||||||||| |||||||| Sbjct 200976 CATGACCTCCCGCGGGCACCTGATGGCCATCACCCGCCACGGCGTCAACCGC 201027 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||||| ||||| || || | || ||||| |||||||||||| || | | Sbjct 168886 AGCGGCTGAAGGGGAAGGAAGGGCGGGTGCGGGGCAACCTCATGGGCAAGCGGGTGGATT 168945 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | |||||| | ||||||| |||||||||| | | | ||| ||| |||||||||| | Sbjct 168946 TCTCGGCGCGCACTGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTCC 169005 Query 507225 CC 507226 || Sbjct 169006 CC 169007 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||||| ||||| || || | || ||||| |||||||||||| || | | Sbjct 169729 AGCGGCTGAAGGGGAAGGAAGGGCGGGTGCGGGGCAACCTCATGGGCAAGCGGGTGGATT 169788 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | |||||| | ||||||| |||||||||| | | | ||| ||| |||||||||| | Sbjct 169789 TCTCGGCGCGCACTGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTCC 169848 Query 507225 CC 507226 || Sbjct 169849 CC 169850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106921646525367