Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2252 111 1e-18 seq2634 95.1 9e-14 seq1911 87.8 1e-11 >seq2252 Length=2960275 Score = 111 bits (122), Expect = 1e-18 Identities = 278/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || ||||| |||||||||||||| | ||||| ||||| || || || ||||| Sbjct 2421716 GCACTGACGTTAAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACT 2421657 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| ||| | | |||| | ||||| || || || || Sbjct 2421656 CCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCTTC 2421597 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAAT 281603 || | | ||||||||| | | |||| || | || | | || || ||||| | Sbjct 2421596 GTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGT 2421539 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| |||||| || ||||| | | || | | | Sbjct 2421538 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTACGCTTGATGAGAGCG 2421480 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 2421479 GTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 2421420 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | |||||| || Sbjct 2421419 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCG 2421360 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGaaaaa 281838 || |||||||| ||||||||||| | | | || || | ||| |||||||| || Sbjct 2421359 TAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 2421304 >seq2634 Length=244221 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | ||||| || ||||| || || ||| | ||| | | | ||||||||| Sbjct 164221 GTGGCTACAGTGGCATTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 164280 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 164281 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 164340 Query 131300 GG 131301 || Sbjct 164341 GG 164342 >seq1911 Length=9989472 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 1142240 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 1142181 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 1142180 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 1142135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740500247103126