Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2004 152 6e-32 seq2378 120 4e-22 >seq2004 Length=1623906 Score = 152 bits (168), Expect = 6e-32 Identities = 581/903 (64%), Gaps = 22/903 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || ||||| || || | ||| Sbjct 1607495 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACCGCAT 1607436 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||| || || |||| |||||||| || ||||| Sbjct 1607435 GGTGGGTAAGGTGCACCCTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 1607376 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || || ||||||| |||| || | ||| || || || || Sbjct 1607375 GCCAGTGCATTCATGTCAGAAACATCATACTTGT-CACTAGAAGACACTGCACCTGGGAC 1607317 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| | || ||| ||||| || || || || || | Sbjct 1607316 TTCAGGGATTCTCTGAATTGTTGCCCATAAGTATTCATCTGGGCTGTAAGTATCTTTTGC 1607257 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAG-AAT--GTAAGAGACGTAGGACCT 162455 |||||| || |||| | || |||| | | | ||| ||| || | || Sbjct 1607256 CCACTCAATTAACT---TAACTATTTTGCTGCTTTGTAATACGTATTCTACAAATCTTCT 1607200 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || ||| ||| Sbjct 1607199 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTT 1607140 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 1607139 GTCTATGCCTGTGTTTTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 1607080 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 1607079 TTCTTTA----TAAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 1607024 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 1607023 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 1606964 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || || ||||| | | ||||| | || |||| Sbjct 1606963 TCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCT 1606904 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || || ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 1606903 GCACCCGGCTCCAGGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 1606844 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 1606843 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 1606787 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 1606786 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 1606727 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || ||||| || || || || || || || || | Sbjct 1606726 TCTCAATTTTGTGATAAACCACTATGGAATAAGCAATTGGAAATTCTGCTTCTTCATTGC 1606667 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | | ||| ||| || | | | | || | |||||||| | ||||||| Sbjct 1606666 TGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGT 1606607 Query 163049 TAA 163051 ||| Sbjct 1606606 TAA 1606604 >seq2378 Length=4917022 Score = 120 bits (132), Expect = 4e-22 Identities = 258/380 (68%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGC--ACCATCTCTAGATTGGTCTTAAGGG 162667 ||||| || |||| || |||||||| | ||| || ||||| |||||||| | || Sbjct 3725797 CTGTTCCGGCCCCGCAGCGCCTTCAG--GGCGCTGACTATCTCAGCGTTGGTCTTGATGG 3725740 Query 162668 GAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGA 162726 | || |||||||||||| || | | ||| | ||| | | | || | | ||| Sbjct 3725739 GGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC-TCTGCAACAGG 3725681 Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786 ||||| | ||||| || || ||||| | || ||| || || || || || | ||| Sbjct 3725680 TCCTGCATGCAGTTGAGGTCTGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCC 3725621 Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846 | | | || ||||||| |||| ||| || | || || || ||||||| | Sbjct 3725620 AGGCGGCTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCCTGG 3725561 Query 162847 AACAT---CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 || || |||| | ||||| || ||||| | |||||| | ||||| |||| |||| Sbjct 3725560 AAGATAGCCGGGGAC---TTCCTGTCAACGTGGATGCAGTAGACGTTCTGGGGGGTGTAG 3725504 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 | || |||||| | | |||||||||||| || || | ||| | || || || || || Sbjct 3725503 AGGGACCTCAGGAGCCGCTCGAACATCTCGATGTTGTTGTGGATGACCATGGAGTAGGCA 3725444 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 ||||||||||| |||||||| Sbjct 3725443 ATGGGGAACTCTGCCTCCTC 3725424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578412832209600