Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1865 104 2e-17 seq1971 86.0 6e-12 >seq1865 Length=263943 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 31525 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 31584 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || ||||| ||||| | ||||||| | ||||||||||| ||||||||| Sbjct 31585 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 31634 >seq1971 Length=2580344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| || ||| || |||||| ||||| || |||| | Sbjct 2121971 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 2121912 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || ||| |||| Sbjct 2121911 AAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACA 2121852 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || || ||||| || || Sbjct 2121851 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 2121792 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 2121791 ACGAAGATCTGCATG 2121777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| || ||| || |||||| ||||| || |||| | Sbjct 2121059 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 2121000 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || ||| |||| Sbjct 2120999 AAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACA 2120940 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || || ||||| || ||| Sbjct 2120939 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTT 2120880 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2120879 ACAAAGATCTGCAT 2120866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595406296360