Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1666 123 8e-25 seq1774 114 4e-22 seq1901 113 1e-21 seq1827 113 1e-21 seq2572 98.7 3e-17 seq2551 98.7 3e-17 seq2241 98.7 3e-17 seq1970 98.7 3e-17 seq2303 91.5 5e-15 seq2373 87.8 6e-14 seq1438 82.4 2e-12 >seq1666 Length=1734841 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1037820 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 1037879 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 1037880 CCCGGGCTTCAGC 1037892 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1050049 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 1049990 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 1049989 CCCGGGCTTCAGC 1049977 >seq1774 Length=6032982 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 4041479 GGCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 4041420 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 4041419 CCCGGGCTTCAGC 4041407 Score = 113 bits (124), Expect = 1e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 962515 TTAGGGCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 962456 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| ||| ||||||||| Sbjct 962455 CAATCCCAGGCTTCAGC 962439 >seq1901 Length=1350326 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 666136 GCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 666195 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 666196 CCGGGCTTCAGC 666207 >seq1827 Length=2695636 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1680904 GCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1680963 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 1680964 CCGGGCTTCAGC 1680975 >seq2572 Length=11124332 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4786243 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4786184 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4786183 CCGGGTTTCGGC 4786172 >seq2551 Length=5888956 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1150708 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1150649 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1150648 CCGGGTTTCGGC 1150637 >seq2241 Length=5500636 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4240798 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4240857 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4240858 CCGGGTTTCGGC 4240869 >seq1970 Length=3539412 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 16306 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 16247 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 16246 CCGGGTTTCGGC 16235 >seq2303 Length=77398 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||||||||| ||||||| |||||||||||||||||| ||||| || |||| | Sbjct 20704 GGCTGGAGTAGCTCAGCCGGGAGAGGATTAGACTGAAGATCTAACGGTCCTTGCTTCAGC 20763 Query 2828 CCCGGGCTTCAGC 2840 ||||| ||||||| Sbjct 20764 CCCGGCCTTCAGC 20776 >seq2373 Length=13450 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||| |||| ||||||| |||||||||||||||| ||||||||| |||| | Sbjct 12429 GGCTGGGGTAGGTCAGCCGGGAGAGGGTTAGACTGAAGATCTAGAGGTCCCTGCTTCAGC 12370 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 12369 CCCGGGCTTCAGC 12357 >seq1438 Length=5843 Score = 82.4 bits (90), Expect = 2e-12 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| ||||||||| ||||||| |||||| ||||||||| |||||||| |||| | Sbjct 80 GGCTGGGGTAGCTCAGCCGGGAGAGGGTTAGACCGAAGATCTAGCGGTCCCTGCTTCAGC 21 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 20 CCCGGGCTTCAGC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849140435895