Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1941 197 2e-44 seq1758 197 2e-44 seq2215 167 3e-35 seq1641 149 9e-30 seq2184 118 2e-20 seq2024 98.7 1e-14 seq1968 86.0 9e-11 >seq1941 Length=3969164 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1817 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1764 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 1763 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 1704 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 1703 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 1644 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 1643 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 1595 >seq1758 Length=6076596 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 4382 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 4329 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 4328 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 4269 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 4268 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 4209 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 4208 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 4160 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 21228 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 21281 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 21282 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 21341 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 21342 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 21401 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 21402 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 21450 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 22739 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 22686 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 22685 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 22626 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 22625 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 22566 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 22565 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 22517 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 32716 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 32663 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 32662 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 32603 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 32602 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 32543 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 32542 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 32494 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 97600 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 97547 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 97546 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 97487 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 97486 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 97427 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 97426 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 97378 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 104380 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 104433 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 104434 AGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 104493 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 104494 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 104553 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 104554 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 104602 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 144160 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 144213 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 144214 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 144273 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 144274 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 144333 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 144334 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 144382 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 122805 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 122752 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||||| |||| Sbjct 122751 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 122692 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 122691 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 122632 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||| ||||||||||||||||||| Sbjct 122631 CTCCTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTCTCCGAGGGCACCA 122583 >seq2215 Length=69687 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| ||||||||| |||| |||| ||| |||| ||||| Sbjct 15537 TACAAGGTGCTGAAGCAAGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 15590 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| ||||| ||| Sbjct 15591 GGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGGGAGGCTTCGCGC 15650 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | |||| ||||||||||| |||||| | Sbjct 15651 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGAGG 15710 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| |||||||||||||||||| |||| Sbjct 15711 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGTACCA 15759 >seq1641 Length=8005783 Score = 149 bits (164), Expect = 9e-30 Identities = 180/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| |||| Sbjct 2286277 TACTCCATCTATGTCTACAAGGTGCTAAAGCAGGTCCACCCCGACACCGG-----CATC- 2286330 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| |||||||| ||||| | || ||||||| Sbjct 2286331 TCCTCCAAGGCCATGGGCATCATGAACTCCTTTGTCAATGACATCTTTGAGCGCATCGCT 2286390 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | ||||||||| ||| ||| | | || ||||| Sbjct 2286391 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGATCCACCATCACCTCCCGGGAGATT 2286450 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 2286451 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCTGTCTCGGAGGGC 2286510 Query 725139 ACCA 725142 |||| Sbjct 2286511 ACCA 2286514 >seq2184 Length=451678 Score = 118 bits (130), Expect = 2e-20 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || ||||| ||||| |||| || | | | | ||| Sbjct 305565 AAGGCCATGAGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGGCTGGCCTCGGAG 305506 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| |||||||| | | |||| | ||| ||| ||| || |||||| | ||||| Sbjct 305505 GCCTCGCGCCTGGCCCAGTACAACCACCGCTCCACCATCACCAGCCGCGAGGTGCAGACG 305446 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | || | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 305445 GCCGTGAGGCTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 305388 >seq2024 Length=1447008 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||| |||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 562125 GAGCCGCTGTTGCGGGACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 562184 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||||||||| ||||| || |||||||| Sbjct 562185 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 562237 >seq1968 Length=216358 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||| ||| | | | |||||||||| ||||||| | |||||| | Sbjct 169007 GGGGACGCCCACCTGGTCGATGGCCAGGTTGGGGTCGGGGGTGATGACAGTGCGCGCCGA 168948 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 || | || |||||||||||| ||||| || | || || ||||| ||||| | ||| Sbjct 168947 GAAATCCACCCGCTTGCCCATGAGGTTGCCCCGCACCCGCCCTTCCTTCCCCTTCAGCCG 168888 Query 1818242 CT 1818243 || Sbjct 168887 CT 168886 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||| ||| | | | |||||||||| ||||||| | |||||| | Sbjct 169850 GGGGACGCCCACCTGGTCGATGGCCAGGTTGGGGTCGGGGGTGATGACAGTGCGCGCCGA 169791 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 || | || |||||||||||| ||||| || | || || ||||| ||||| | ||| Sbjct 169790 GAAATCCACCCGCTTGCCCATGAGGTTGCCCCGCACCCGCCCTTCCTTCCCCTTCAGCCG 169731 Query 1818242 CT 1818243 || Sbjct 169730 CT 169729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177555506177462