Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2024 111 1e-19 >seq2024 Length=1447008 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||| || || ||||| ||||| || || |||||||| |||||| Sbjct 562970 CAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 563029 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || ||||| ||||||||||||||||| || || || ||||| |||||| | |||| | Sbjct 563030 ATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACATTAAAGATTCTAAAGAGAGG 563089 Query 44033 CATCGATTGTTTAATG 44048 | ||||||| ||| Sbjct 563090 TTTGTATTGTTTGATG 563105 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||||| |||||||| ||||||||||| || || ||||| Sbjct 565048 GGAGAACGTGTTGTAGCTTTTGCAGCAGTGGAAGGAATTTTCTTTTCTGGCTCTTTTGCA 565107 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || |||||||| | || ||||| ||||| | Sbjct 565108 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 565167 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 565168 ATCAGTAGAGATGA 565181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443158569255