Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2378 203 4e-47 seq2453 138 1e-27 >seq2378 Length=4917022 Score = 203 bits (224), Expect = 4e-47 Identities = 658/1004 (66%), Gaps = 46/1004 (5%) Strand=Plus/Plus Query 13611 TACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGT-GAG 13669 ||| ||||||||||| |||||| | |||| || || | | || | || | ||| Sbjct 3725352 TACCTGAACATGACGAAGGACTGCAGGAGCTTC---AAGGAGACGCGGCAGTTCATCGAG 3725408 Query 13670 GCCCC--TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 ||| |||||| ||| |||| ||||| ||||| |||||||| || || |||||| || Sbjct 3725409 TTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAAC 3725468 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 || ||||||||||||||||| ||||||||| || ||||| |||| |||||| |||||||| Sbjct 3725469 AACATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGC 3725528 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCC---GGGGCGTCTCGGCCATCGCC 13844 ||||||| ||| |||||| || | | || ||| || ||| |||||||| Sbjct 3725529 ATCCACGTTGACAGGAAGTCC-CCGGCTA--TCTTCCAGGAGGCCGTGCGGGCCATCGTA 3725585 Query 13845 AGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGG 13904 |||||||| || | |||| ||| ||| | | ||||| || | ||||||| Sbjct 3725586 GCCTGCTTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGG 3725645 Query 13905 AGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGT 13962 || ||||||| ||||||| ||||||| ||||||| | | ||| | || | Sbjct 3725646 TCCCGGCTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCA--T 3725703 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || || || |||||| ||||| | || ||||| ||||||||||| ||||| | Sbjct 3725704 GGCACTATCTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAG 3725763 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT--GC-- 14076 | | || |||||||| ||| | ||| |||| | ||||| || || | | | || Sbjct 3725764 TCAGCGCCCTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCT 3725823 Query 14077 CCAACC--ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGT 14134 |||| | || |||| | | |||| ||| | |||| ||| | | | Sbjct 3725824 CCAAGCGGGCACGCTG-GCAGTATCA-------CCACATAGTGG-----GGCAG-TTCAT 3725869 Query 14135 GGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194 | || | || | || ||||| || | || |||||| || |||| || Sbjct 3725870 CTCCCGGACAGCCACAGAGAAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAA 3725929 Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGC 14254 || ||| | || ||||| |||| |||||| | | | || | || || || | Sbjct 3725930 TGCGTACATCGCAGTCACACGGGCCTTCGTGCAGTACATCTTTGAGAAC---CCCACAAC 3725986 Query 14255 CCTGC---TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCAC 14311 |||| || | | ||| | ||||||| |||||||| ||||||||| | |||||||| Sbjct 3725987 ACTGCAGTTCTTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACATCTGGGCCAC 3726046 Query 14312 CGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTC 14371 | | | | ||| || ||| || | ||| | | ||||| | | ||| Sbjct 3726047 CCTCAACCGCATGCCTGGCGTGCCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTC 3726106 Query 14372 GGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAA 14431 ||| ||| ||| | | | ||||||||||| ||| ||||| || || || Sbjct 3726107 GGATATGAACGCCCTACCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAA 3726166 Query 14432 AGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTC 14491 || || | |||||||| ||| |||| ||| | | || ||||||||| |||| Sbjct 3726167 GGGCGCGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGT 3726226 Query 14492 CGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG 14550 ||||||||| ||| || ||| | | ||||| || ||||||||||||||| || Sbjct 3726227 GGGCGACGTGCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCG 3726285 Query 14551 AGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | ||||| |||| | | || ||||| ||| || ||||| Sbjct 3726286 TGGTGGACGCCGCCGCCATCCTGTGCCTGGAGGAGTACCTGCGC 3726329 >seq2453 Length=13183191 Score = 138 bits (152), Expect = 1e-27 Identities = 422/638 (66%), Gaps = 41/638 (6%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || ||||| |||||| ||| ||| || |||||| | |||| |||||||| ||| Sbjct 5986383 TTCCCCATTGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGACCTTCGAGCGGCTC 5986327 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | ||||| | ||| || || ||| |||||||| ||| |||||| ||||| | || Sbjct 5986326 TTCAGGGCAGTGTACATGCCCCAAAACATCTACTGCACCCATGTGGACACCAAGGCACCG 5986267 Query 13810 GCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCCCTAACGTGGCCC 13866 || | | ||||| |||| |||| | | | | |||||||| |||| || Sbjct 5986266 GCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCCCCAACGCCTTCC 5986212 Query 13867 TGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCA 13926 | ||| |||| | | ||||| |||||| | ||| ||| |||||||||| Sbjct 5986211 TCGCCTCCCGGGCGGAGTGGGTGGTCTACGGCGGCGCCTCCCGCCTGCGGGCCGACCTCC 5986152 Query 13927 GCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCG 13986 ||||||| |||||| ||||| || | ||| | |||||||||||| |||| Sbjct 5986151 ACTGCATGAGAGACCTGCTGGCCTCGGCCATGCCCTGGCGCTACCTGCTCAACACCTGCG 5986092 Query 13987 GGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCG 14046 | ||||||||| | |||||||||| ||||||||| | | ||| |||| | | || | Sbjct 5986091 GCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTGCTCAAGGGCTTTGGGG 5986032 Query 14047 GCAAGAAC----GCCCTGGAGAGCGAGGGCATGCCCAACCACA-AGCTGCACCGCATCAG 14101 | |||||| ||| || | || | || ||| ||||| |||| ||||| | Sbjct 5986031 GGAAGAACATCACCCCCGGGGTGC--TGCCA--CCCCCCCACATCACTGC-CCGCACAAA 5985977 Query 14102 GAAGAGGCAC---GTGGTGGCCAG-----CGGCGGCGTGG-TGGTCAACACCGGCAGGAA 14152 | |||| | || |||||| || || || || ||| | || || | | Sbjct 5985976 ATATGTGCACAGGGAGGGGGCCAGGCACAATGCCTCGGGGCTGATCACCCCCTGCCTGCA 5985917 Query 14153 CAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCAC 14212 |||||| || ||||| | || || |||||| || || ||| |||| ||||| Sbjct 5985916 CAAGGCGCCCCCGCCCCACAACATGACCATCTACTTTGGCTCTGCATACATTGCCGTCAC 5985857 Query 14213 CCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC---CGGTGGCCCTGCTCATGCACTG 14269 |||| |||||||| ||||| || ||||| | | | | | ||||| ||| || Sbjct 5985856 CCGGCCCTTCGTGGAGTTCGTGCTGCAGGACCAACGCTCCATCGATCTGCT--GGCA-TG 5985800 Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 || ||||||||| |||||||| || |||||| | |||| Sbjct 5985799 GTCCGAGGACACCTACAGCCCTGATGAGCACTTCTGGG 5985762 Score = 132 bits (146), Expect = 6e-26 Identities = 260/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || ||||| |||||| ||| ||| || |||||| | |||| Sbjct 5997647 GAGGAGGCCGCCTTCCCCATTGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGACC 5997591 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||| | ||||| | ||| || || ||| |||||||| |||| |||||| Sbjct 5997590 TTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACATCTACTGCATCCATGTGGAC 5997531 Query 13800 TCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCC 13854 ||||| | |||| | | ||||| |||| |||| | | | | ||||||| Sbjct 5997530 ACCAAGGCACCGGCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCC 5997476 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGC 13914 | |||| ||| ||| |||| | | ||||| |||||| | ||| ||| Sbjct 5997475 CCAACGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTGC 5997416 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||||||||| ||||||| |||||| ||||| |||| ||| | ||||||| Sbjct 5997415 GGGCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGC 5997356 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 ||||| ||||| ||||||||| | |||||||||| ||||||||| | | ||| | Sbjct 5997355 TCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTGCTCA 5997296 Query 14035 AGGCCCTGGGCGGCAAGAAC 14054 ||| | | || || |||||| Sbjct 5997295 AGGGCTTTGGGGGGAAGAAC 5997276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658717371029760