Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2572 122 5e-23 >seq2572 Length=11124332 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| ||||| ||| || ||| ||||||||| ||||| || || ||| Sbjct 4780889 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 4780948 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||||| ||||||| || || || || ||||| || || | ||| || || ||||| Sbjct 4780949 AGGGTTCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGA 4781008 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | ||| ||||| | ||| || Sbjct 4781009 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 4781067 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4781068 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4781116 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| ||||| ||| || ||| ||||||||| ||||| || || || Sbjct 4781116 GCCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 4781175 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || ||| ||||||| || || || || ||||| || | | ||| || || || || Sbjct 4781176 AAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGTGG 4781235 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| ||||| | ||| | Sbjct 4781236 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 4781294 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 4781295 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 4781344 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| ||||| ||| |||||| |||||| || ||||| || || || Sbjct 4781344 GCCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 4781403 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || || ||||| || | | ||| || || || || Sbjct 4781404 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 4781463 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| ||||| | ||| | Sbjct 4781464 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 4781522 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || || || || || | || |||||||| |||||||| || Sbjct 4781523 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 4781574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719431381683