Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06]
2,651 sequences; 1,202,994,831 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq2453 118 9e-22
seq1540 84.2 2e-11
>seq2453
Length=13183191
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || |||||||||||||| ||||| |||||||| | ||||| || ||||| |||
Sbjct 10941908 GTGGTGGAAGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGGATTGTGGCCTTCTTCGAG 10941967
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| || || || ||||||||||| |||||||| | | || | ||||||| |||| |
Sbjct 10941968 TTCGGCGGCGTGATGTGTGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 10942027
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||||| |||||||| ||
Sbjct 10942028 ATCGCCGCCTGGATGACCGA 10942047
>seq1540
Length=7905106
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
||||| || | || |||||||||||||| | || || ||||| | ||| |||||
Sbjct 6218403 AGCCCCGTGACATGGGCAATCATGTATGTAAGCAGTGAATAACTGGCAATATTGAAAGGC 6218462
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| ||||| ||||| ||| | || ||||| || | |||||| || | || || ||| |
Sbjct 6218463 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGA 6218522
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||| | | || |||||||||| | ||||
Sbjct 6218523 ACATAGAACTGGCAAAGAGCATGGCATGGAGGCAAAGCCAT 6218563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414463408643164
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |