Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq242 136 4e-27 seq2024 116 4e-21 >seq242 Length=229 Score = 136 bits (150), Expect = 4e-27 Identities = 109/130 (84%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 8479 GCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGA 8538 ||| || || |||||| |||||||| ||||||| ||| |||||||| ||||||||||| Sbjct 209 GCTCATATTCCTATTTTCAGTAGAGACGGGGTTTCTCCACGTTGGCCACGCTGGTCTCGA 150 Query 8539 ACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGG-GATTACAGGCA 8597 |||||||||| || |||||||||| ||| |||||||||||||||||| | |||||| Sbjct 149 ACTCCTGACCACAAATGATCCACCTTCCTGGGCCTCCCAAAGTGCTGGAAACGACAGGCC 90 Query 8598 TGAGCCACCG 8607 |||||| ||| Sbjct 89 TGAGCCGCCG 80 >seq2024 Length=1447008 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | |||||||||||| || | ||| ||||||||||||| ||| || Sbjct 565181 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 565122 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| |||| ||||| || || ||||||||||| || || || || ||||| || Sbjct 565121 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 565062 Query 23653 ACAAGACGT 23661 |||| |||| Sbjct 565061 ACAACACGT 565053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521470719191400