Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1850 149 9e-31 seq1911 127 3e-24 >seq1850 Length=1560141 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 758079 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 758020 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 758019 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 757960 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 || | ||||| |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 757959 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 757900 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 757899 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 757840 Query 9484 TG 9485 || Sbjct 757839 TG 757838 Score = 136 bits (150), Expect = 6e-27 Identities = 215/307 (70%), Gaps = 1/307 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || || || || || || ||| | |||| || ||| | | ||| Sbjct 760131 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 760072 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| || ||||||||| | |||| Sbjct 760071 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 760012 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || || | ||| | || Sbjct 760011 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 759952 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||| ||| || | | || | ||||||||||| Sbjct 759951 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 759892 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | ||| || ||||| | ||||| || || || || ||||||||||| Sbjct 759891 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 759832 Query 8588 TTATTAA 8594 ||||||| Sbjct 759831 TTATTAA 759825 >seq1911 Length=9989472 Score = 127 bits (140), Expect = 3e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 2221610 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 2221669 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 2221670 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATA 2221729 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | || | ||| Sbjct 2221730 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTTCTTGGGG 2221789 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTC 9470 || | || || |||| |||||| | ||||| | || |||| | |||||| |||| || Sbjct 2221790 ACGGCAGGCGGGTAGACCATGTGGA-CTGGAGCATCAGTGACTGTGGGGGGGTACACCTC 2221848 Query 9471 ACCGTCAATCATCT 9484 || || | || || Sbjct 2221849 TCCATCCACCACCT 2221862 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 2219097 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 2219156 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | |||||| Sbjct 2219157 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGAT 2219216 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| ||||| | || || || || | ||||| ||| |||| |||||| || || Sbjct 2219217 GGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAG 2219274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716853044495040