Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq34224 132 4e-26 seq25668 93.3 4e-14 >seq34224 Length=26671 Score = 132 bits (146), Expect = 4e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || ||||| |||||||| ||||| || ||||| || || || | Sbjct 11344 CCACCTCCTCTTTGCTGGTATACTCCACAATTTCTGTACACAGGTTGCTGCATTTGATGG 11285 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || || ||||||||||||||||| | Sbjct 11284 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTG 11225 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 11224 TGCCGGTCTCGGTCTGTGACTCGATGATAGC 11194 >seq25668 Length=3966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || ||| Sbjct 645 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGAGT 704 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || ||||||||||||| | || || |||||| Sbjct 705 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 764 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| |||||||| ||| ||||||| || || || || ||| Sbjct 765 CAGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 824 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||| || |||| | | || ||||| |||| Sbjct 825 ATCCAGAAGGAATCCACTCTGCACTTGGTCTTGCGCCTCAGGGGTGGTA 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445531369665600