Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq21369 120 4e-22 seq15601 114 2e-20 seq4120 114 2e-20 seq34224 87.8 2e-12 >seq21369 Length=8464 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9448 ACAAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCT 9507 |||| | |||||| ||| | |||| | |||||||||| ||| ||||||||||||| Sbjct 2715 ACAACAAAAAAATCATCAATATGACAACGTACCCTGCTCCAAATTTGCTGAAATCTCTCT 2774 Query 9508 TTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTT 9567 |||| || | |||||||||||||| ||||||| || |||||||| || || || |||| Sbjct 2775 TTGACTGCAAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTT 2834 Query 9568 GCATAACGACATGCACATCATAGAAA 9593 ||| |||| ||||||||||||| Sbjct 2835 GCAAGACGATGGACACATCATAGAAA 2860 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||||| |||||| || | |||| |||| ||| || |||| ||||||||||||||| || Sbjct 1415 TATTTTTTATTAAATGCCTCCAGTAAGC-GTAGTAGGTGCAGGAACAGATTGATGATGTC 1473 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| | |||| | || | | || |||||||| || | || || || || | Sbjct 1474 CAAGTAGAGACTGATTGCAGCCAGGATGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 1533 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||||||||| | ||| || ||| ||||| | |||| Sbjct 1534 ATGAGTGTCATAAATAATAAATCCGCAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAA 1593 Query 9407 CTCCACTGTTTCAC 9420 ||| | ||| |||| Sbjct 1594 CTCTATTGTCTCAC 1607 >seq15601 Length=90986 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 3740 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3681 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 3680 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3621 Query 36300 C 36300 | Sbjct 3620 C 3620 >seq4120 Length=36603 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || || || ||||| ||||| | ||| | Sbjct 25232 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCCCTCTTCT 25291 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 25292 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 25351 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 25352 CAACCACTCTCTCACC 25367 >seq34224 Length=26671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || ||| Sbjct 9673 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGTTGT 9614 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 9613 TCTTCCTTCCCAGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCCAAATGCCAGGGC 9554 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 9553 TCCAGGTAGATGGCAAAAGCCCCAGG 9528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || || ||| ||| | || ||||| || ||||| | Sbjct 17742 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCATAGTTGGGCTCTGCAATGTGGATGT 17683 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 17682 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 17623 Query 65026 TTTGTGGAATTTCCCA 65041 | || | || ||||| Sbjct 17622 TCTGGGAGATCTCCCA 17607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657825778391200