Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq25668 104 2e-17 seq21656 95.1 9e-15 >seq25668 Length=3966 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | ||| |||||||| || || || |||||||| || Sbjct 1101 TGCCACCTCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1042 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||||| | ||| |||||||| | |||| | || ||||| || Sbjct 1041 ACAGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGTG 982 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || || || ||| ||| ||| ||| | || |||||||| || ||| | Sbjct 981 GAATGCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCAA 922 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||| ||||| || || ||||| || || ||||| || |||||| Sbjct 921 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 872 >seq21656 Length=48212 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || | ||| |||||||| || || || |||||||| || Sbjct 495 TGCCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 436 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | ||||| |||||| | |||| | || ||||| | Sbjct 435 ACAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGG 376 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| ||||| ||| ||| |||| ||||| || || || | Sbjct 375 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTTTCAATGGTGTCACTGGGCTCAA 316 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | ||| ||||| || || ||||| || || ||||| || ||||| || Sbjct 315 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || | ||| |||||||| || || || |||||||| || Sbjct 951 TGCCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 892 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | ||||| |||||| | |||| | || ||||| | Sbjct 891 ACAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGG 832 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| ||||| ||| ||| | || ||||| || || || | Sbjct 831 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 772 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| ||||| ||||| || || ||||| || ||||| Sbjct 771 CCTCAAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | |||||||||||| || || || |||||||| || Sbjct 723 TGCCACCTCTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 664 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | || |||||||| | |||| | || ||||| | Sbjct 663 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 604 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || ||| ||| ||| | || ||||| || || || | Sbjct 603 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 544 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || ||||| || || || || || ||||| Sbjct 543 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361993014991380