Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq21249 158 2e-33 seq4590 104 3e-17 >seq21249 Length=26544 Score = 158 bits (174), Expect = 2e-33 Identities = 216/299 (72%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | |||||||| ||||| || ||| | |||| || ||| | | |||| Sbjct 5692 GGAAAGCTGTGAACGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 5633 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || ||||| || | |||| Sbjct 5632 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAATACTCAGGGG 5573 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || ||||||| ||||| || ||||| || || || | ||| | || Sbjct 5572 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAAAATGGTGCTCCAATCTCCACCATTG 5513 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| || ||||| || | ||||| |||| Sbjct 5512 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5454 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5453 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 5395 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| Sbjct 3653 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3594 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 3593 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATTAAGCCTGGG 3534 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 3533 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 3474 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || || |||||||| || ||||| ||| Sbjct 3473 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGGTACATTTCTCCATCAATCATC 3414 Query 9862 TG 9863 || Sbjct 3413 TG 3412 >seq4590 Length=11299 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| || || |||||||||||||| | |||| Sbjct 873 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGG 932 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 933 AGCAGATTGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 992 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 993 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCA 1052 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1053 GAGCGTCAATGTCTCCATACAG 1074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708151230299200