Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4120 129 7e-25 seq15601 120 4e-22 seq34224 93.3 5e-14 >seq4120 Length=36603 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || || || ||||| ||||| | ||| | Sbjct 25232 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCCCTCTTCT 25291 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 25292 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 25351 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 25352 CAACCACTCTCTCACC 25367 >seq15601 Length=90986 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 3740 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3681 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || |||||||||||||||||||| ||||| ||||| | Sbjct 3680 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3621 Query 33446 C 33446 | Sbjct 3620 C 3620 >seq34224 Length=26671 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 9673 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGTTGT 9614 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 9613 TCTTCCTTCCCAGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCCAAATGCCAGGGC 9554 Query 63336 TCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 9553 TCCAGGTAGATGGCAAAAGCCCCAGG 9528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | || || ||||||||||| || || || || || || || || || || | Sbjct 2585 CACTGAACACCTTCTTGGTTTCCTTGTGCAGGTTGGACACTGCAATCCTTGCTGCCAGGA 2526 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || |||| || || || || || ||||||| |||| || |||| Sbjct 2525 TGGCATAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCGGCAGCCAACGTATCCA 2466 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | || | ||| ||||| || ||||| Sbjct 2465 GTTCCACTGTGGTGACACCACTGTAGAGTCCCTGAATCACTTTCAT 2420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || ||||| || || || ||| ||| | || ||||| || ||||| | Sbjct 17742 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCATAGTTGGGCTCTGCAATGTGGATGT 17683 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 17682 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 17623 Query 62182 TTTGTGGAATTTCCCA 62197 | || | || ||||| Sbjct 17622 TCTGGGAGATCTCCCA 17607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622618751088800