Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21656 113 4e-20 seq25668 111 1e-19 seq34224 102 8e-17 >seq21656 Length=48212 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | ||| | ||| || ||||| || |||||||| ||| Sbjct 1179 AGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 1120 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| || ||||| ||||||||||| || |||| | | ||||||||| || | Sbjct 1119 ACAGGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 1060 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 1059 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 1000 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 999 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 950 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 722 GCCACCTCTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 663 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 662 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 603 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 602 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 543 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 542 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 494 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 950 GCCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 891 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||| || || ||| |||| | | ||||||||| || || Sbjct 890 CAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 831 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | ||| | || || ||| ||| | Sbjct 830 AATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 771 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 770 CTCAAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 722 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 494 GCCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 435 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||| || || ||| |||| | | ||||||||| || || Sbjct 434 CAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 375 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | || | || || ||| ||| | Sbjct 374 AATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTTTCAATGGTGTCACTGGGCTCAAC 315 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 314 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 266 >seq25668 Length=3966 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| || || | || || ||||| || ||||||||||| || ||||||| Sbjct 403 CGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCA 344 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | ||||||||| || ||||| || || ||| Sbjct 343 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 284 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | || ||| ||| ||| | || | ||| | | Sbjct 283 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 224 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || ||||| ||||||||| Sbjct 223 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 188 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| || || || | || || ||||| || |||||||| || || ||||||| Sbjct 859 CGCAAGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 800 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || | || | | ||||||||| || ||||| ||||| ||| Sbjct 799 TCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 740 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | |||||| | | ||||| || | ||| | | Sbjct 739 TCCTGGATCTTGGCCTTCACATTCTCAATAGTATCACTCGGCTCGACCTCAAGGGTGATG 680 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| |||||||| Sbjct 679 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 645 >seq34224 Length=26671 Score = 102 bits (112), Expect = 8e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| ||||| ||||||||||| ||||| || ||||| || || ||||||||||| | | Sbjct 11306 CACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAG 11247 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 || |||||||||||||||||| ||| ||||| ||| | ||| | |||| Sbjct 11246 TCTTTGTAGAGCATGTACGGTGTGCCGGTCTCGGTCTGTGACTCGATGATA 11196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471763931251200