Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25668 107 2e-18 seq21656 95.1 1e-14 >seq25668 Length=3966 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 1099 CCACCTCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1040 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| |||| |||| ||| ||||| || Sbjct 1039 AGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGA 980 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| || || ||| | |||||| | | | || || | ||| || | Sbjct 979 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCAACT 920 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 919 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 873 >seq21656 Length=48212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 493 CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 434 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || | ||||| || || | || |||| ||| ||||| || Sbjct 433 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 374 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| |||||| | | | ||||| | |||||| Sbjct 373 ATGCCTTCTTTGTCCTGGATTTTTGC--CTTCACATTTTCAATGGTGTCACTGGGCTCAA 316 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || ||||| || || ||||| |||||||| ||| Sbjct 315 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| || ||| | || Sbjct 1163 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATC 1104 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| ||| | || |||| ||| ||||| || | ||| |||||||| Sbjct 1103 CTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1044 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | |||||| Sbjct 1043 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 986 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || || |||||||| Sbjct 985 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 951 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 721 CCACCTCTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 662 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||| || ||||| ||| | || |||| ||| ||||| Sbjct 661 AGGGT----GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 606 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 || | ||| |||||||| || || || |||||| | | | ||||| | |||| Sbjct 605 GGGAATGCCTTCTTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGC 548 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | |||||||| || || ||||| || || || || |||||||| Sbjct 547 TCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 949 CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 890 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || | ||||| || || | || |||| ||| ||||| || Sbjct 889 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 830 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| |||||| | | | ||||| | |||||| Sbjct 829 ATGCCTTCTTTGTCCTGGATTTTTGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAA 772 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 771 CCTCAAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404879756918200