Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq34224 107 4e-18 seq4120 87.8 3e-12 >seq34224 Length=26671 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 |||||||||| | |||| |||| ||||| || || || ||||| ||||| ||||||| Sbjct 11344 CCACCTCCTCTTTGCTGGTATACTCCACAATTTCTGTACACAGGTTGCTGCATTTGATGG 11285 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| ||| |||||||||||| | || Sbjct 11284 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTG 11225 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 ||||||||| ||| | ||| || | |||||| | | ||||| ||| || Sbjct 11224 TGCCGGTCTCGGTCTGTGACTCGATGATAGCATACCAGAGCTGCTGGGCCTTCACCACCC 11165 Query 244884 TGCG 244887 |||| Sbjct 11164 TGCG 11161 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || ||||| || ||| ||||| || | || ||| |||| | Sbjct 13589 CCTTTGCTGACAGGAGAACCCTCATATGTCTCATAGGGTCCTTGCTCCTTGGCAAGCTCA 13530 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 ||||| | || | || |||| ||||||||||| |||||| || ||||| | ||| | Sbjct 13529 CAGCTGGCTTCCAAAGCACCGTAATAGATGGTCTCAAAGATCTGCTGGTTCAAG-CGCTG 13471 Query 244442 -GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 |||| | | ||||||| | ||| | |||||| | || ||||| |||||||| Sbjct 13470 CGCCTCGGGACTCTCAAAGGGGAACCTCATGAGGATGAAGGCATCTGCCAGGCCCTGCAC 13411 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 || ||||||||||| | ||| ||| ||||||||||| Sbjct 13410 CCCAATGCCGATGGGACGGTGGCGCCTGTTGGAGCGC 13374 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | || || || Sbjct 9668 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGTTGTTCTTC 9609 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | |||||||||||| ||| || | ||| ||||||| ||| | ||||||||||||| Sbjct 9608 CTTCCCAGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCCAAATGCCAGGGCTCCAG 9549 Query 245128 GTAGA 245132 ||||| Sbjct 9548 GTAGA 9544 >seq4120 Length=36603 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 25367 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 25308 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| || || || ||||| || ||||| Sbjct 25307 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGGCTGACTTTCTCCAATGAACTT 25248 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 25247 ATTAGCAGAGATGAGG 25232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943841297156800