Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21656 113 5e-20 seq25668 100 3e-16 seq24948 89.7 6e-13 >seq21656 Length=48212 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| ||| | ||| | ||| ||||| || || ||||| |||| | Sbjct 493 CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 434 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| ||||||||||| || || | ||||||||| | || Sbjct 433 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 374 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| ||||||| || | | | | ||||| || | || || Sbjct 373 ATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 314 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 313 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 264 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||||| ||| | ||| | ||| ||||| || || ||||| |||| | Sbjct 949 CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 890 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| ||||||||||| || || | ||||||||| | || Sbjct 889 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 830 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| ||||||| || | || | | ||||| || | || || Sbjct 829 ATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 770 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 769 TCAAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 723 >seq25668 Length=3966 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||| ||| | ||| | ||| ||||| || |||||||| |||| Sbjct 644 ACCACCTCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGA 585 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || || ||||||||||| || || | | ||||||||| | || Sbjct 584 CAGGGTGCGCCCATCTTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGG 525 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || || | || | | | || || | ||| || Sbjct 524 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGTTATCACTGGGTTCAAC 465 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 464 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 417 >seq24948 Length=13532 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4238 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4179 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4178 TACTAACGAGGA 4167 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3483 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3424 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3423 TACTAACGAGGA 3412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542926391051200